jalview.git
2020-06-08 soaresJAL-3446 new Jmol 15.1.3 jar added to j11lib, old j11li...
2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,...
2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc...
2020-06-02 Ben SoaresJAL-3225 Using Gradle Git-Version plugin to set gitHash...
2020-06-02 soaresJAL-3225 small fixes for building within Eclipse
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in...
2020-06-01 gmungocJAL-3518 test result corrected
2020-06-01 gmungocJAL-3518 add alwaysRun = true [sigh]
2020-06-01 gmungocJAL-3518 more test coverage for structure commands
2020-05-29 gmungocJAL-2422 test updated
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol
2020-05-28 gmungocJAL-3551 corrected Pymol open session command
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands...
2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir
2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected...
2020-05-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2020-05-26 gmungocJAL-1889 disable test failing on build server
2020-05-26 soaresMerge branch 'bug/JAL-3541_cloverReport_gradle_task_fai...
2020-05-26 soaresJAL-3541 added a property/variable style comment to... bug/JAL-3541_cloverReport_gradle_task_fails
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction...
2020-05-25 soaresJAL-3541 selectively merged build.gradle and gradle...
2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERS...
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull...
2020-05-21 gmungocJAL-2422 highlight ChimeraX selection (ChimeraX-1.0...
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands...
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs()
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-05-18 gmungocJAL-3613 remove debug code committed in error
2020-05-15 gmungocJAL-2422 JAL-3551 unit tests updated for code changes
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent...
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class
2020-05-15 gmungocMerge branch 'feature/JAL-3551Pymol' into feature/JAL...
2020-05-15 gmungocJAL-3551 raise label on ('highlight') structure residue...
2020-05-15 Ben SoaresJAL-3541 Fixed report path for build artifacts
2020-05-14 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting
2020-05-14 Ben SoaresJAL-3541 Individual tests now instrumented and reported...
2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands...
2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor...
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment
2020-05-12 gmungocJAL-3518 failsafe check for null Jmol filename while...
2020-05-11 gmungocJAL-3551 concatenate colour by sequence commands for...
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised...
2020-05-11 gmungocJAL-2422 ChimeraX paths (versions up to 1.0) added...
2020-05-11 gmungocJAL-1333 additional Chimera versions for Windows instal...
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search...
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings...
2020-04-30 gmungocJAL-3551 tidied error handling for HTTP request
2020-04-25 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-04-22 soaresJAL-3225 save auto formatting settings in org.eclipse...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle...
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
2020-04-21 gmungocJAL-3210 try adding setup method to unit test failing...
2020-04-21 gmungocJAL-1889 corrected wait for consensus to be calculated
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list...
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
2020-04-21 Jim ProcterJAL-367 code tidy
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2020-04-21 Ben SoaresJAL-3602 Added configuration for enforced use of UTF...
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips
2020-04-17 BobHansonadded .gitignore paths
2020-04-16 BobHansonJAL-3587 Load Project bug
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit...
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque...
2020-04-16 gmungocJAL-3567 report mapped location for virtual features...
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec...
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base...
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue...
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f...
2020-04-14 gmungocJAL-3583 remove debug logging, Javadoc added
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e...
2020-04-12 gmungocJAL-3596 change redacted
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text...
2020-04-12 gmungocJAL-3583 consistent last[Formatted]Tooltip, show once...
2020-04-09 BobHansonJAL-3587 save and reload project file fix
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