jalview.git
2020-06-02 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253 HoldRepaint and SeqCanv...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Jalview2XML integration...
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253-applet AlignmentPanel...
2020-06-02 BobHansonJAL-3446 from JAL-3253 AppletFormatAdapter not fixed
2020-06-02 BobHansonPreferences/StructureViewer fix
2020-06-02 BobHansonthis was supposed to go on a separate branch. Didn...
2020-06-02 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-02 BobHansonJAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader...
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in...
2020-06-02 BobHansonJAL-3446 JAL-3253 Preferences
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet StockholmFile updated...
2020-06-02 BobHansonhelpful hints from Ben
2020-06-02 gmungocJAL-3446 latest jmol zip from JAL-3253-applet (commit...
2020-06-02 gmungocJAL-3446 fix broken test
2020-06-02 BobHansonBob's gitignore addition
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet web page embedding
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet JalviewLite scrollTo...
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet CalculationChooser
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet StructureViewer/Chooser
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet temp. Desktop instance...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet AppletParams + Cache...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet ArgsParser
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet Platform JS interface...
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet Preferences final static...
2020-06-01 BobHansonJAL-3262 from JAL-3523-applet JalviewApp and JalviewJSApi
2020-06-01 BobHansonJAL-3262 from JAL3253-applet core_jvjmol.z.js static...
2020-06-01 BobHansonJAL-3626 Regex optimization from JAL-3253-applet; also...
2020-06-01 BobHansonTHIRDPARTYLIBS referred to intervalstore-v1.0 still
2020-06-01 BobHansoncorrects Platform.openURL
2020-06-01 BobHansonJAL-3626 adding compatible Platform.java
2020-06-01 BobHansonSwingJS update
2020-06-01 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-01 BobHansonswingjs/api, javajs/async
2020-06-01 soaresJAL-3225 small fixes for building within Eclipse
2020-05-28 soaresMerge branch 'Jalview-JS/develop' of https://source...
2020-05-28 BobHansonJAL-3626 transpiler and SwingJS upgrade
2020-05-28 BobHansonVarna fix for hashtable.remove(value) [unclear]
2020-05-28 BobHansonJAL-3636 ColorUtils cleaner test for hex color
2020-05-28 soaresMerge branch 'develop' into Jalview-JS/develop
2020-05-28 BobHansonGitter comment 2020.05.28 Cache.log.err(msg) not appearing
2020-05-28 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS
2020-05-28 gmungocJAL-3624 use temp file for SIFT download in JS, correct...
2020-05-28 gmungocJAL-3624 log when SIFTS mapping fails
2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir
2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected...
2020-05-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2020-05-26 gmungocJAL-1889 disable test failing on build server
2020-05-26 soaresMerge branch 'bug/JAL-3541_cloverReport_gradle_task_fai...
2020-05-26 soaresJAL-3541 added a property/variable style comment to... bug/JAL-3541_cloverReport_gradle_task_fails
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop
2020-05-25 soaresJAL-3541 selectively merged build.gradle and gradle...
2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERS...
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs()
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-05-18 gmungocJAL-3613 remove debug code committed in error
2020-05-15 Ben SoaresJAL-3541 Fixed report path for build artifacts
2020-05-14 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting
2020-05-14 Ben SoaresJAL-3541 Individual tests now instrumented and reported...
2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands...
2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor...
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search...
2020-04-22 soaresJAL-3225 save auto formatting settings in org.eclipse...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle...
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
2020-04-21 gmungocJAL-3210 try adding setup method to unit test failing...
2020-04-21 gmungocJAL-1889 corrected wait for consensus to be calculated
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list...
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
2020-04-21 Jim ProcterJAL-367 code tidy
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2020-04-21 Ben SoaresJAL-3602 Added configuration for enforced use of UTF...
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips
2020-04-17 BobHansonadded .gitignore paths
2020-04-16 BobHansonJAL-3587 Load Project bug
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit...
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque...
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