jalview.git
2017-05-22 tcofoegbuMerge branch 'features/JAL-2136_phyre2_integration...
2017-05-22 tcofoegbuJAL-2136 broken build fix attempt
2017-05-01 tcofoegbuResolve properties file merge conflict with develop
2017-05-01 tcofoegbuMerge branch 'develop' into spikes/phyre
2017-05-01 tcofoegburesolved merge conflict
2017-05-01 tcofoegburesolve merge conflict in SiftsClientTest
2017-05-01 tcofoegbumerge develop
2017-05-01 gmungocMerge remote-tracking branch
2017-05-01 gmungocJAL-2434 omit unmapped positions from mapping
2017-04-28 gmungocJAL-2495 highlight all mapped sequences from structure...
2017-04-28 gmungocJAL-2434 check all sequences when determining superposa...
2017-04-28 gmungocJAL-2434 use a constant for StructureMapping.NO_CHAIN...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe...
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties...
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide...
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for...
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-27 Jim ProcterMerge branch 'develop' into features/JAL-1933_occupancy
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment
2017-04-25 tcofoegbuJAL-2489 Unit test for bug
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors
2017-04-21 gmungocJAL-2295 Spanish translations added
2017-04-21 gmungocJAL-2361 Spanish text added
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header...
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-18 tcofoegbuJAL-2136 merged develop into branch to fix build failure
2017-04-18 tcofoegbuJAL-2136 corrected error in annotation file
2017-04-12 gmungocJAL-2361 tweak layout of warning message
2017-04-11 kiramtJAL-2479 Moved some network-dependent unit tests into... bug/JAL-2479unitteststoNetworkGroup
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher...
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour...
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check...
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of...
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour...
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461
2017-03-31 gmungocJAL-2405 additional checks for circular reference in...
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items...
2017-03-30 gmungocJAL-2401 code and help tidy for review comments
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups
2017-03-28 tcofoegbuclean up mistake in the test file allhits.ann
2017-03-28 tcofoegbuJAL-2136 JAL-2137 Added improvement to enable explicit...
2017-03-28 tcofoegbuJAL-2136 fixed failing unit test for Phyre2Client
2017-03-28 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb...
2017-03-28 tcofoegbuJAL-2465 unit test for bugfix
2017-03-28 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-03-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-24 kiramtJAL-2314 Tidy up
2017-03-24 kiramtJAL-2314 Fixes to DisorderAnnotExportImport test
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-03-23 kiramtJAL-2388 unit test initialisation fix for running full...
2017-03-23 kiramtJAL-2314 Tweaks to stop thread sync issues
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 kiramtJAL-2314 Tidies
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