jalview.git
2016-10-03 Jim ProcterJAL-2210 explicit ‘doNotAdd’ list to prevent sequences...
2016-10-02 Jim ProcterJAL-2210 first pass at attempting to fix CrossRef tests...
2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list:
2016-10-02 Jim ProcterJAL-2210 two pass attempt to import retrieved sequences...
2016-10-02 Jim ProcterJAL-2210 try to merge all sequences referenced by a...
2016-10-02 Jim ProcterJAL-2210 comments
2016-10-02 Jim ProcterJAL-2210 discover candidate dataset sequences for an...
2016-10-02 Jim ProcterJAL-2079 pass server name when reporting FTS ‘warning...
2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro...
2016-10-01 Jim ProcterJAL-2210 factored out code for processing cross-referen...
2016-10-01 Jim ProcterJAL-2210 refactor code to remove from a list of dbrefs...
2016-09-30 Jim ProcterJAL-2210 some DBRef xref/ref correspondences may add...
2016-09-30 Jim ProcterJAL-2210 CrossRef.findInDataset should search for prese...
2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP...
2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings...
2016-09-30 gmungocMerge branch 'develop' into features/JAL-1856dbRefFetch...
2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation...
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections...
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code...
2016-09-29 gmungocJAL-2213 made RESNUM constant private (not used elsewhe...
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;...
2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search
2016-09-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-09-29 Jim ProcterJAL-2089 fix broken help link
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc...
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into...
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup
2016-09-29 gmungocJAL-2047 allow title to be shrunk; spelling fix
2016-09-29 gmungocJAL-1544 typo
2016-09-29 gmungocJAL-1903 increase REST reply timeout from 5 to 15 seconds
2016-09-28 Jim ProcterJAL-2210 patch network test for additional refs
2016-09-28 Jim ProcterJAL-2210 JAL-2235 fix deriveSequence test for tightened...
2016-09-28 Jim ProcterJAL-1270 read test props before manipulating config...
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used...
2016-09-28 Jim ProcterJAL-2235 implicit test to check that exception is raise...
2016-09-28 Jim ProcterJAL-2235 raise exceptions if self reference or referenc...
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence
2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries
2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting...
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-09-27 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro...
2016-09-27 Jim ProcterJAL-2210 formatting
2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources...
2016-09-27 Jim ProcterJAL-2210 resolve todo - addDBRef adds to dataset sequen...
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres...
2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to
2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to...
2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
2016-09-24 Jim ProcterJAL-1919 whats new link
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit
2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation...
2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structu...
2016-09-23 Jim ProcterJAL-1957 release notes
2016-09-23 Jim ProcterJAL-1962 release notes
2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair...
2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes
2016-09-23 gmungocJAL-2214 Javadoc
2016-09-22 Jim ProcterJAL-2275 release notes
2016-09-22 Jim ProcterJAL-2151 release notes
2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash
2016-09-22 Jim ProcterJAL-2168 -news release notes
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-22 Jim ProcterJAL-1557 release notes
2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows...
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files...
2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature...
2016-09-22 gmungocJAL-2216 finalize call super.finalize()
2016-09-22 gmungocJAL-2216 finalise corrected to finalize
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation...
2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click...
2016-09-22 Jim ProcterJAL-2189 tidy up docs
2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmat...
2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and...
2016-09-22 gmungocJAL-2216 finalize call super.finalize()
2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release...
2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus docum...
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble...
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse...
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore...
2016-09-21 Jim ProcterJAL-2189 reworked annotation docs
2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not...
2016-09-19 Jim ProcterJAL-1577 release notes
2016-09-19 Jim ProcterJAL-2027 releasenotes
2016-09-19 Jim ProcterJAL-1563 release notes
2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documen...
2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054...
2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq document...
2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff...
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