jalview.git
2014-05-27 Jim ProcterJAL-1509 update deployJava.js from java.com/js/deployJa...
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls...
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label...
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus...
2014-05-23 Jim ProcterJAL-1445 updated documentation and added link in whatsNew
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec...
2014-05-22 Jim Procterremove non-utf8 characters in help pages
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-22 Jim ProcterJAL-1355 JAL-1503 update i18n note
2014-05-22 Jim ProcterJAL-1503 new entry for 2.8.1 release history
2014-05-22 Jim ProcterJAL-1503 JAL-1355 note about internationalisation in...
2014-05-17 Jim ProcterJAL-1477 documentation and tooltips
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into Release_2_8_1_Branc...
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to...
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch_i18n
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
2014-05-12 Jim ProcterJAL-1397 catch other random version strings
2014-05-12 Jim Procterpatch for regression introduced JAL-1397
2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour...
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct...
2014-05-02 Jim Procterformatting
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per...
2014-05-01 Jim ProcterJAL-1397 (probably buggy) test for recovery of backgrou...
2014-05-01 Jim Procterremove todo
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...
2014-05-01 Jim Procterjavadoc
2014-05-01 Jim Procterproperly quit so JUnit marks tests as successful
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for...
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current...
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify...
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment...
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker...
2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with...
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow...
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into Release_2_8_1_B...
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy...
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlig...
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three...
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch_i18n
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch
2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional...
2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter
2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed
2014-04-27 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into Release_2_8_1_B...
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown...
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder predict...
2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices colou...
2014-04-27 Jim ProcterJAL-952 JAL-1268 document RNA Helices and T-Coffee...
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list...
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices'
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin...
2014-04-27 Jim Proctertest for JAL-952
2014-04-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into Release_2_8...
2014-04-25 Jim Procterfix for JAL-1268
2014-04-25 Jim Proctertest for JAL-1268
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset...
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only...
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML...
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that...
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to...
2014-04-25 Jim ProcterJAL-1177 refactored command line test harness
2014-04-25 Jim Proctertest for JAL-1177 store and recover RNA secondary struc...
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set...
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release
2014-04-23 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
2014-04-21 Jim ProcterJAL-1458 updated logo for installer
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation
2014-04-21 Jim ProcterJAL-1355 keys for colours
2014-04-21 Jim Procterfix for JAL-1438
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branc...
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation
2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available...
2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to constru...
2014-04-21 Jim ProcterJAL-1485
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat...
2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream...
2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry...
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when...
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures...
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL...
2014-04-21 Jim Procterfix for JAL-1478
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug
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