jalview.git
2016-05-26 Jim ProcterJAL-2089 update developer doc
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-05-26 Jim ProcterJAL-1400 JAL-2089 allow configurable signature algorithms
2016-05-26 Jim ProcterJAL-1551 formatting
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander
2016-05-26 gmungocJAL-1670 add non-positional feature with link to demons...
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences'
2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1919 JAL-1479 user help docs
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop...
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /...
2016-05-26 gmungocJAL-2008 drag to reorder features not available in...
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor
2016-05-20 gmungocJAL-2114 explicit invalid test cases added
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
2016-05-20 gmungocJAL-2115 updated web link for MAFFT (and one typo)
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature...
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
2016-05-18 tcofoegbumerge
2016-05-18 tcofoegbuJAL-1563 User documentation for Uniprot FTS
2016-05-18 tcofoegbuJAL-1563 smarter support for advanced querying of Unipr...
2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for...
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
2016-05-17 tcofoegbumerge
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated...
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly
2016-05-11 tcofoegbuJAL-1563 updated uniprot FTS config file
2016-05-09 tcofoegbumerge
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
2016-05-09 tcofoegbuJAL-2102 implemented improvement to round FTS's numberi...
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature...
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
2016-05-06 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-05-06 Jim ProcterJAL-192 fix javadoc
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables
2016-05-06 Jim ProcterJAL-1551 formatting
2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrappe...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical...
2016-05-06 Jim ProcterJAL-2100 optimisation
2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped...
2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case
2016-05-05 gmungocJAL-2068 better documentation in example script
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case...
2016-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness"
2016-05-04 gmungocJAL-2092 hide columns with/without feature
2016-05-04 gmungocJAL-2074 corrected classpathentry for Groovy 2.4.6
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
2016-05-04 tcofoegbumerge
2016-05-04 tcofoegbuJAL-1563 JAL-2091 Added total result count to Uniprot...
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
2016-05-03 Jim ProcterMerge branch 'r291_docs' into develop
2016-05-03 tcofoegbuJAL-2091 disable pagination buttons during initialisation
2016-05-03 tcofoegbuJAL-1563 JAL-2091 Added generic pagination for FTS...
2016-05-02 tcofoegbuJAL-1563 Fixed Uniprot FTS result-set count error,...
2016-05-02 Jim ProcterJAL-1270 move some Network tests to External (require...
2016-05-02 Jim ProcterJAL-1270 capitalise test groups
2016-05-02 Jim ProcterJAL-2089 JAL-1551 formatting
2016-05-02 Jim ProcterJAL-2089 release 2.9.1 entry in release notes
2016-04-29 tcofoegbumerge
2016-04-29 tcofoegbuJAL-1563 house keeping/updated API doc for new method... merge/JAL-1563_uniprot-free-text-search
2016-04-29 tcofoegbuJAL-1563 Further increased swing timer for search textf...
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated...
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-29 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for...
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when...
2016-04-29 Jim ProcterJAL-192 scale origin relative to start of reference...
2016-04-29 Jim ProcterJAL-966 JAL-1553
 todo: remove UI components from Colum...
2016-04-29 Jim ProcterJAL-1551 formatting

2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque...
2016-04-29 Jim ProcterJAL-1551 formatting
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-28 tcofoegbuJAL-1563 increased swing timer for search action from...
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
2016-04-28 tcofoegbuJAL-1563 fixed failing tests for FTS Rest Client core
2016-04-28 tcofoegbuJAL-1563 Increased default response size to 500, and...
2016-04-28 tcofoegbuJAL-1563 Implemented hack to make table both scrollable...
2016-04-27 tcofoegbuJAL-1563 Added Id (Uniprot Id) to the dynamic column...
2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no...
2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue...
2016-04-27 tcofoegbuJAL-1563 Added fix to prevent swing timer from reinitia...
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
2016-04-27 tcofoegbuJAL-1563 further modificaiton of the uniprot data colum...
2016-04-27 tcofoegbuJAL-1563 Modified Uniprot data column configurations...
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