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jalview.git
2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
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2018-01-25
kiramt
JAL-2778 Tidy
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2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
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2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
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2018-01-24
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
releases/Release_2_10_3_Branch
Release_2_10_3b1
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2018-01-24
Jim Procter
JAL-2858 update release date and rejig what's new message
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2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-23
Jim Procter
JAL-2858 fix what's new
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2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-23
Jim Procter
JAL-2858 update latest release notes link in TOC
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2018-01-23
Jim Procter
JAL-2859 release notes
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2018-01-23
Jim Procter
JAL-2858 update release notes
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2018-01-22
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-22
Jim Procter
JAL-2858 release notes for 2.10.3b1 (including revision...
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2018-01-22
Jim Procter
JAL-2858 bump version number for 2.10.3b1
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2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
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2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
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2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
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2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
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2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
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2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
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2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
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2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
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2018-01-18
kiramt
JAL-2759 Updated test
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2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
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2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
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2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
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2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
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2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
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2018-01-16
kiramt
JAL-2759 Unit test for PopupMenu hideInsertions code
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2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
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2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
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2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
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2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
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2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
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2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
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2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
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2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
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2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
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2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
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2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
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2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
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2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
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2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
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2018-01-15
kiramt
JAL-2759 Updated HiddenColumnsTest::testIsVisible follo...
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2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
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2018-01-15
kiramt
JAL-2759 Updates following review
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2018-01-12
kiramt
JAL-2886 trivial unit test fix
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2018-01-11
kiramt
Merge remote-tracking branch 'origin/task/JAL-2662...
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2018-01-11
kiramt
JAL-2662 Updated README
task/JAL-2662
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2017-12-19
Jim Procter
JAL-2880 disabled non-functional test - Jmol parser...
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2017-12-01
Jim Procter
Merge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn...
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2017-11-30
Jim Procter
JAL-2858 tweak OSX specific jar resources in JNLP
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2017-11-30
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2017-11-30
Jim Procter
JAL-2849 release notes
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2017-11-30
Jim Procter
Merge branch 'bug/JAL-2849' into develop
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2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
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2017-11-30
Jim Procter
JAL-2849 fix
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
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2017-11-28
Jim Procter
JAL-2740 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
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2017-11-28
Jim Procter
JAL-2827 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
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2017-11-28
Jim Procter
JAL-2842 release notes
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2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
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2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
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2017-11-27
Jim Procter
JAL-2859 failing test demonstrating sequences with...
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2017-11-27
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2017-11-27
Jim Procter
JAL-2851 JAL-2858 release notes for 2.10.3b1
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2017-11-27
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2017-11-27
Jim Procter
Merge branch 'bug/JAL-2851' into develop
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2017-11-24
kiramt
JAL-2759 update benchmark code
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2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
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2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
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2017-11-22
kiramt
JAL-2842 JAL-2759 change to SeqPanel moveCursor
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2017-11-22
kiramt
JAL-2759 code tidy
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2017-11-22
kiramt
JAL-2759 performance improvements to hideColumns
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2017-11-22
kiramt
JAL-2759 performance tweaks
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2017-11-22
kiramt
JAL-2759 HiddenColumns test polishing
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2017-11-21
kiramt
JAL-2759 corrected old getVisibleBlocksIterator calls...
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2017-11-21
kiramt
JAL-2759 Remove getVisibleBlocksIterator call
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2017-11-21
kiramt
Merge branch 'develop' into feature/JAL-2759
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2017-11-21
kiramt
JAL-2759 BoundedStartRegionIterator test
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2017-11-21
kiramt
JAL-2759 unit tests for VisibleContigsIterator
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2017-11-20
Jim Procter
JAL-2698 only allow InstallAnywhere launches with versi...
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2017-11-20
Jim Procter
JAL-2698 patch path for InstallAnywhere build. Webstart...
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2017-11-20
kiramt
JAL-2759 cursor option for BoundedStartRegionIterator
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2017-11-20
kiramt
JAL-2759 reinstate change from develop (JAL-2636) someh...
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2017-11-20
kiramt
JAL-2759 rationalise visible contigs iteration
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2017-11-20
kiramt
JAL-2759 improvements to speed up synchronisation;...
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2017-11-17
Jim Procter
JAL-2698 tidy release notes and whats new
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2017-11-17
Jim Procter
JAL-2698 source code licencing
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2017-11-17
Jim Procter
JAL-2698 tidy up release notes
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2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
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2017-11-17
Jim Procter
JAL-2466 revised help text for sort by PID
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2017-11-17
Jim Procter
JAL-2698 what’s new and release notes
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2017-11-17
Jim Procter
JAL-2822 known defect for 2.10.3
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2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
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