jalview.git
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4212_remove_macos_test_ja...
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left...
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-3830_remove_dock_icon_in_...
2023-08-18 Ben SoaresMerge branch 'bug/JAL-4242_exception_when_pressing_esca...
2023-08-18 Ben SoaresJAL-3416 Remove full height separators between new... improvement/JAL-3416_FlatLaf_3.2
2023-08-18 Ben SoaresJAL-3416 flatlaf and flatlaf-extras 3.2 jars
2023-08-18 Ben SoaresJAL-4242 null check on getValue() return bug/JAL-4242_exception_when_pressing_escape_in_fetch_from_URL_dialog
2023-08-17 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t...
2023-08-17 Ben SoaresJAL-3830 JAL-4160 Remove --noheadless as --gui does...
2023-08-17 James ProcterJAL-4090 JAL-4243 bio.tools json file release notes
2023-08-16 Ben SoaresJAL-3830 JAL-3421 Conda launch script for 2.11.3 and...
2023-08-16 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_remove...
2023-08-16 Ben SoaresJAL-4160 JAL-3830 Improvements to the jalview.sh bash...
2023-08-16 Ben SoaresJAL-3820 JAL-4189 Use the same LaunchUtils methods...
2023-08-16 Ben SoaresJAL-3820 JAL-4189 Move checks for java executable symli...
2023-08-11 Ben SoaresJAL-629 Much better way of dealing with list of filenam...
2023-08-10 Ben SoaresJAL-629 more tests for stdout
2023-08-10 Ben SoaresJAL-629 STDOUT documentation. Opt.STDOUT narrower...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-08-10 Ben SoaresJAL-629 Method to use for printStackTrace
2023-08-09 Ben SoaresJAL-629 Move more stdout messages to stderr when output...
2023-08-09 Ben SoaresJAL-629 Default to FASTA if no format given for output...
2023-08-09 Ben SoaresJAL-629 Enable output to STDOUT when specifying output...
2023-08-09 Ben SoaresJAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels
2023-08-08 Ben SoaresJAL-244 Added light grey marks to indicate regions...
2023-08-08 Ben SoaresJAL-244 Fix mismatched vertical positioning of sequence...
2023-08-07 Ben SoaresJAL-244 Avoid working on the Ids Graphics object when...
2023-08-04 Ben SoaresJAL-244 Adjust wrapped alignment widths to always maint...
2023-08-02 Ben SoaresJAL-244 Fix buglet with automatic change in id column...
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments...
2023-08-01 Ben SoaresMerge branch 'develop' into feature/JAL-244_Automatical...
2023-07-28 Ben SoaresJAL-4064 Added more recognisable display names to macOS...
2023-07-27 Ben SoaresMerge branch 'develop' into feature/JAL-244_Automatical...
2023-07-27 Ben SoaresJAL-244 Allow wrap manual adjustments to be smaller...
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode...
2023-07-25 Ben SoaresJAL-244 testing without AlignFrame for --wrap
2023-07-22 James ProcterJAL-4243 Jalview 2.11.2.7’s biotool record as JSON...
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non...
2023-07-20 Ben SoaresJAL-244 More accurate width calculation, allow increase...
2023-07-20 Ben SoaresJAL-244 test files
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae
2023-07-20 James ProcterJAL-3855 auto select clusters and fix up colouring...
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts...
2023-07-19 James ProcterMerge branch 'patch/JAL-3855_fixup_pae' into develop
2023-07-18 James ProcterMerge branch 'develop' into patch/JAL-3855_fixup_pae
2023-07-18 James ProcterJAL-4153 comments re patch incorrectly committed under...
2023-07-18 Ben SoaresJAL-4513 move comments
2023-07-18 Ben SoaresJAL-4513 now re-add the SwingUtilities.invokeAndWait... bug/JAL-4513_JvCacheableInputBoxTest_flaky_on_build_server
2023-07-18 James ProcterJAL-3855 PAE matrices are transposed on import from...
2023-07-18 James ProcterJAL-3855 JAL-4124 test checks asymmetric matrices are...
2023-07-18 James ProcterJAL-3858 fix off-by-one in matrix visualisation and...
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top...
2023-07-18 James ProcterJAL-3858 annotation .height is bigger than graphHeight...
2023-07-18 Ben SoaresJAL-4513 reduce wait to invoke fail
2023-07-18 Ben SoaresJAL-4513 add a SwingUtilities.invokeAndWait() to see...
2023-07-17 Ben SoaresJAL-3599 Updated default eclipse to 'latest' and made...
2023-07-17 James ProcterJAL-4119 TRACE level console message reporting download...
2023-07-17 James ProcterJAL-4090 JAL-4165 known issue
2023-07-17 James ProcterJAL-4090 JAL-4165 known issue
2023-07-17 James ProcterJAL-4223 add testdata for test
2023-07-17 James ProcterJAL-4090 mark JAL-4178 and JAL-4142 as known issues
2023-07-17 James ProcterJAL-4217 move Commands.structureImageTest to testTask1
2023-07-12 James ProcterJAL-4223 - test and patch to ensure numbering matches...
2023-07-10 James ProcterMerge branch 'improvement/JAL-4212_remove_macos_test_ja... improvement/JAL-4212_remove_macos_test_java_icons
2023-07-10 James ProcterMerge branch 'improvement/JAL-3830_remove_dock_icon_in_...
2023-07-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-07-07 James ProcterJAL-4217 JAL-629 built in 25s time out waiting for...
2023-07-07 James ProcterJAL-4090 update 2.11.3.0 release notes (with in-progres...
2023-07-07 James ProcterMerge branch 'patch/JAL-4119_sifts_ftp_split' into...
2023-07-07 James ProcterMerge branch 'develop' into patch/JAL-4195_cli_eps_expo... patch/JAL-4195_cli_eps_export_npe
2023-07-07 James ProcterJAL-4195 add exception handling for all other CommandsT...
2023-07-07 James ProcterJAL-4221 update description when transferring annotatio...
2023-07-07 James ProcterJAL-629 even more console debug for --structureviewer...
2023-07-06 James ProcterJAL-629 liberal defensive coding, comments about refact...
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin...
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn...
2023-07-06 James ProcterJAL-4217 interruptedExceptions should also break any...
2023-07-06 James ProcterJAL-2292 verify mixed case alignment actually aligns
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp...
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp...
2023-07-05 James ProcterMerge branch 'patch/JAL-2292_caseSensitivePAE' into...
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection...
2023-07-04 James ProcterMerge branch 'merge/from_2_11_2_7_to_2_11_3_0' into...
2023-07-04 James ProcterJAL-4117 JAL-1551 source licensing
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of...
2023-06-30 James ProcterJAL-4216 release notes
2023-06-30 James ProcterJAL-4216 compute size of annotation using start/end...
2023-06-30 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop
2023-06-30 Ben SoaresJAL-4001 Added a random id to User-Agent to ensure... task/JAL-4001_Plausible_API
2023-06-29 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes...
2023-06-29 James ProcterJAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
2023-06-29 James ProcterJAL-4001 analytics url provided by https://jalview...
2023-06-28 Ben SoaresJAL-4001 change Plausible discovery URL
2023-06-28 Ben SoaresJAL-4001 remove stray --headless mode analytic
2023-06-28 Ben SoaresMerge branch 'task/JAL-4001_Plausible_API' into improve...
2023-06-28 Ben SoaresJAL-3820 add java and java.exe from JAVAHOME to list...
2023-06-28 Ben SoaresJAL-4001 remove headless code from analytics
2023-06-28 Ben SoaresJAL-4001 Remove analytics for --headless mode
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