jalview.git
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac...
2023-05-11 Ben SoaresJAL-629 Added linkedId to ArgValuesMap for reference...
2023-05-10 Ben SoaresJAL-629 Check Arg options for obtaining boolean or...
2023-05-10 Ben SoaresJAL-629 Catch a NPE, fix a test
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging...
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value...
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the...
2023-05-09 Ben SoaresJAL-629 more docs
2023-05-09 Ben SoaresJAL-629 change --renderer to --textrenderer to be more...
2023-05-05 Ben SoaresJAL-629 test fixes
2023-05-04 Ben SoaresJAL-629 Moved additional CommandLineOperationsNG tests...
2023-05-04 Ben SoaresJAL-629 More NG arguments: --features, --annotations...
2023-05-03 Ben SoaresJAL-629 a bit more documentation
2023-05-03 Ben SoaresJAL-629 added eps and imagemap. Added --output and...
2023-05-02 Ben SoaresJAL-629 Changed --newframe and --allframes to --new...
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output...
2023-05-01 Ben SoaresJAL-629 fix lang label names after adjusting colour...
2023-05-01 Ben SoaresJAL-629 real life test for --allframes
2023-04-30 Ben SoaresJAL-629 Change behaviour of --open GLOB to increment...
2023-04-29 Ben SoaresJAL-629 Only log to console FAILED tests
2023-04-29 Ben SoaresJAL-629 Added --all arg, [*] linkedId and functionality...
2023-04-28 Ben SoaresJAL-629 Fixed the argfile1 after subval separator change
2023-04-28 Ben SoaresJAL-629 Fixed the argfiletests after subval separator...
2023-04-28 Ben SoaresJAL-629 Fixed the argfile after subval separator change
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something...
2023-04-28 Ben SoaresJAL-4167 Now we don't fail testTasks on No Matching...
2023-04-27 Ben SoaresJAL-629 Part-way to honouring --tests argument
2023-04-27 Ben SoaresJAL-629 start of help text
2023-04-27 Ben SoaresJAL-629 changed args in tests
2023-04-27 Ben SoaresJAL-629 Fixed appending URLs
2023-04-27 Ben SoaresJAL-629 Changed --increment to --newframe to make sense...
2023-04-27 Ben SoaresJAL-629 allow opening URL as only argument(s)
2023-04-27 Ben SoaresJAL-4167 Added OVERALL summary to bash output
2023-04-26 Ben SoaresJAL-4167 Added colours to bash output
2023-04-26 Ben SoaresJAL-4167 Allow a test to run in multiple testTasks
2023-04-26 Ben SoaresJAL-629 shorter wait times for this test
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work with normal...
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work with normal...
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work
2023-04-26 Ben SoaresJAL-629 JAL-4167 Added args to tests. Fixed potential...
2023-04-24 Ben SoaresJAL-629 Add --nowebdiscovery. Distinguish arg=="open...
2023-04-24 Ben SoaresJAL-629 Put commandsTest.jvprops in the right place
2023-04-24 Ben SoaresJAL-629 loaded props from arg in failing build server...
2023-04-24 Ben SoaresJAL-629 Dynamic sleep in test, more diagnostics
2023-04-24 Ben SoaresJAL-629 Dynamic sleep in test
2023-04-24 Ben SoaresJAL-629 Move diagnostics to the right place
2023-04-24 Ben SoaresJAL-629 Diagnosis output for failing test
2023-04-24 Ben SoaresJAL-629 Count VISIBLE annotations for tests
2023-04-24 Ben SoaresJAL-629 attempt to fix tests on build server (more...
2023-04-23 Ben SoaresJAL-629 single threaded test for viewer window for...
2023-04-23 Ben SoaresJAL-629 even longer wait for viewer window for build...
2023-04-23 Ben SoaresJAL-629 longer wait for viewer window for build server
2023-04-23 Ben SoaresJAL-629 Change --open to --append and --opennew to...
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args...
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure...
2023-04-14 Ben SoaresJAL-629 Adding PAE and TFType at structure loading...
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-04-12 Ben SoaresJAL-629 deleted test output file from repo
2023-04-12 Ben SoaresJAL-629 mild improvement to test
2023-04-12 Ben SoaresJAL-629 Fixed ~ based test for build server
2023-04-12 Ben SoaresJAL-629 Add substituteHomeDir to getDirname(). Tighten...
2023-04-12 Ben SoaresJAL-629 Put old -props back as will now use old parser
2023-04-12 Ben SoaresJAL-629 Fix non-multi string bootstrap arg bug.
2023-04-12 Ben SoaresJAL-629 setprop test disabled as feature is disabled
2023-04-12 Ben SoaresJAL-629 parse SubVals once with ArgValue. Ensure SubVal...
2023-04-12 Ben SoaresJAL-629 allow argfiles in argfiles, but avoid looping...
2023-04-12 Ben SoaresJAL-629 allow comments in argfiles '#'
2023-04-12 Ben SoaresJAL-629 DON'T use quotation marks in argfiles as they...
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti...
2023-04-04 Ben SoaresJAL-629 more info in usage statement
2023-04-04 Ben SoaresJAL-629 Start of Usage statement
2023-04-04 Ben SoaresJAL-629 More consistent printing of --arguments. Exampl...
2023-04-04 Ben SoaresJAL-629 Remove debugging comment
2023-04-04 Ben SoaresJAL-629 --initsubstitutions as a bootstrap arg, new...
2023-04-03 Ben SoaresJAL-629 sort files from java glob for predictability...
2023-04-03 Ben SoaresJAL-629 Removed --headless to fix CommandsTest
2023-04-03 Ben SoaresJAL-629 added setprop. More filename based substitution...
2023-03-31 James ProcterMerge branch 'features/JAL-4134_treeviewerforcolumns... feature/JAL-4162_Read_and_write_Relaxed_PHYLIP_format new_feature/JAL-4019_ambiguous_base_colourscheme
2023-03-30 Ben SoaresJAL-629 More extensive tests with real files being...
2023-03-30 Ben SoaresJAL-629 fix bug for opening single named file with...
2023-03-30 Ben SoaresJAL-629 Don't use new ArgParser if there are no --args...
2023-03-30 Ben SoaresJAL-629 fix SubVals npe
2023-03-29 Ben SoaresJAL-629 extensive tests for ArgParser features
2023-03-29 Ben SoaresJAL-629 Added --opennew --nonews --nosplash. Added...
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet
2023-03-25 Ben SoaresJAL-629 open initial non-Arg arguments as files in...
2023-03-25 Ben SoaresJAL-629 improvements to argparser toString. Improvement...
2023-03-24 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-03-24 James ProcterJAL-4158 first attempt at stashing colours for contact...
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-03-24 Ben SoaresJAL-629 Test tidyup
2023-03-23 James ProcterMerge branch 'patch/JAL-4153_flakyJvCacheableInputBoxTe...
2023-03-23 Ben SoaresJAL-629 don't clear appProps in tests
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to...
2023-03-21 Ben SoaresJAL-629 null checks for Desktop.instance.closeAll(...
2023-03-20 James ProcterJAL-4134 override default hasTree so PAE tree is saved!
2023-03-20 James ProcterJAL-4153 longer Thread.sleep() calls in the hope that...
2023-03-20 James ProcterJAL-4134 - missing Jalview project JAXB class - st...
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr...
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