jalview.git
2011-08-04 jprocterJAL-883 - refactored and debugged arrow, stem and helix...
2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think...
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at...
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2011-07-25 janengelhardtsome print statements to test things
2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where...
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock...
2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences...
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence...
2011-07-25 janengelhardtJAL-842: some bugfixes;
2011-07-25 janengelhardtJAL-842; Added the TextField to edit structure in VARNA
2011-07-25 janengelhardtJAL-842; trimming single structures for single sequence...
2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer...
2011-07-25 janengelhardtVarna external frame bug solved
2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks...
2011-07-25 janengelhardtclean code
2011-07-25 janengelhardtFurther structure accessing feature
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes
2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included
2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic...
2011-07-25 janengelhardtJAL-842, Further creation of VARNA classes (probably...
2011-07-25 janengelhardtContainer for VARNA classes are created according to...
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen...
2011-07-25 janengelhardt'Add doc for JalviewRNASupport what was done/todo'...
2011-07-25 janengelhardt'Help files updated with RNA stuff' merge; JAL-580
2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580
2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580
2011-07-25 janengelhardtStart merging of Laurens Code
2011-07-25 janengelhardtNew branch created and author list changed to test...
2011-07-22 jproctertodo for JAL-860 - associate multiple sequences with...
2011-07-22 jprocterapplet min/max annotation shading parameter documentati...
2011-07-22 jprocterensure propagation of colour change on annotation updat...
2011-07-22 jprocterfix NPE when annotation colourgradient is applied
2011-07-22 jproctercode style
2011-07-22 jprocterdefault parameter for colours in annotation shading...
2011-07-22 jproctermethod to get a user default colour (JAL-234)
2011-07-21 jprocterretrieve all sequences matching a particular name ...
2011-07-21 jprocterlocal instance of deployJava script from Sun/Oracle
2011-07-21 jprocterrefined applet example on examples page
2011-07-21 jprocterbetter layout and structure display on startup
2011-07-21 jprocterensure contents of hash is extended JAL-876
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick...
2011-07-10 jprocterprogress when saving state (JAL-870) and hack to trap...
2011-07-09 jprocterdocumentation for menu item JAL-860
2011-07-09 jproctermenu item and constructor to open a bunch of structures...
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860)
2011-07-09 jproctertodo re JAL-732
2011-07-09 jprocterJAL-868 todo
2011-07-08 jprocteropen each query result from an alignment datasource...
2011-07-07 jproctercomment re JAL-153
2011-07-07 jprocterSet job title correctly and pass reason why
2011-07-07 jprocterextract sequence from DNA bases like 'DG' (JAL-866)
2011-07-06 jprocterensure selseq is trimmed to just sequences included...
2011-07-05 jprocterRevert "partial patch for JAL-411 - text rendered above...
2011-07-05 jprocterpartial patch for JAL-411 - text rendered above features
2011-07-05 jprocterensure javascript and jmol example directories are...
2011-07-05 jprocterMerge branch 'master' of https://source.jalview.org...
2011-07-05 jprocterRevert "Revert "needed for linkedapplets_ng.html (JAL...
2011-07-05 jprocterRevert "needed for linkedapplets_ng.html (JAL-859,JAL...
2011-07-05 jprocterneeded for linkedapplets_ng.html (JAL-859,JAL-469)
2011-07-05 jprocterwhole frame should be validated.
2011-07-05 jprocterignore any events after manager has already been finalized.
2011-07-05 jprocterrefactor to send list of model filenames involved in...
2011-07-05 jprocter(JAL-856,JAL-621)
2011-07-05 jprocternew and restructured javascript examples and documentat...
2011-07-04 jprocterjmb isn't created yet, so use another SSM provider
2011-07-03 jprocterTODO re JAL-433 - filter events if alignFrame is specif...
2011-07-03 jprocterdocumentation (JAL-859, JAL-816, JAL-621)
2011-07-03 jprocterextracted jalviewlite API calls as separate interface...
2011-07-03 jproctergroovy scripting examples (JAL-???)
2011-07-03 jprocterjavadoc built under dist directory for all Jalview...
2011-06-30 jprocterset initial annotation panel height appropriately ...
2011-06-29 jprocterstandard embedded jalviewLite example (JAL-815)
2011-06-29 jprocterdocumentation and targets for building a working applet...
2011-06-29 jprocterrepaint image buffer height change (JAL-564) and ensure...
2011-06-29 jprocterrepaint image buffer resize when panel height changes...
2011-06-29 jprocterpreliminary patch to reduce problem observed in JAL-546
2011-06-29 jprocterensure annotation height adjuster doesn't disappear...
2011-06-28 jprocterfixes JAL-849 - double check after waiting a bit that...
2011-06-26 jprocterreinstated valid XML content : additional for JAL-775
2011-06-26 jprocterbasic Netbeans project files and enriched build documen...
2011-06-24 jprocterfix to preserve sequence numbering in MSF (JAL-847)
2011-06-23 jprocterjmb isn't created yet, so use another SSM provider
2011-06-23 jprocterpatch for JAL-846 made targetChain mapping constraint...
2011-05-30 jprocterbug for clients using NJTree directly - pwtype should...
2011-05-30 jprocterfirst patch for JAL-838 - allow new typed of PID calcs
2011-05-19 jprocterexample applet and desktop application files that shoul...
2011-05-19 jprocterexample applet and desktop application files that shoul...
2011-05-19 jprocterRevert "just a test"
2011-05-18 jprocterjust a test
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-05-17 jprocterinterface for objects at root of a jalview session's
2011-05-17 jprocterinterface for handlers of alignmentViewPanel events
2011-05-17 jproctercruisecontrol again
2011-05-17 jprocteranother cc test
2011-05-17 jprocterMerge branch 'master' of https://source.jalview.org...
2011-05-17 jproctertest cruisecontrol
2011-05-17 jproctertest cruisecontrol
2011-05-17 jprocterensure all colour statements added to string set
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