All Classes

AACon AAConClient AAConWS Align Alignment AlignmentMetadata AlignResponse Analize AnalizeResponse AnnualStat Argument AsyncExecutor AsyncJobRunner AsyncLocalRunner BlastAll BlastBlastComparator BlastHmmerComparator BlastParameters BlastParser CancelJob CancelJobResponse ChunkHolder Cleaner ClustalAlignmentUtil ClustalO ClustalOWS ClustalW ClustalWS ClusterJobId ClusterSession ClusterUtil CommandBuilder ConfExecutable Configurator ConfiguredExecutable ConservationMethod CustomAlign CustomAlignResponse CustomAnalize CustomAnalizeResponse DirectoryManager Disembl DisemblWS DisorderMethod DisplayStat Environment EnvVariableProcessor Executable Executable.ExecProvider ExecutableWrapper ExecutionStatCollector FastaReader FastaSequence FilePuller GenericMetadataService GetAnnotation GetAnnotationResponse GetJobStatus GetJobStatusResponse GetLastTested GetLastTestedOn GetLastTestedOnResponse GetLastTestedResponse GetLimit GetLimitResponse GetLimits GetLimitsResponse GetPresets GetPresetsResponse GetResult GetResultResponse GetRunnerOptions GetRunnerOptionsResponse GetSupportedServices GetSupportedServicesResponse GlobPlot GlobPlotWS Hit Hit.EvalueComporator Hit.NumberComporator IOHelper IsOperating IsOperatingResponse IUPred IUPredWS JABAService JackHmmerHitParser JManagement JnetAnnotation Job JobExecutionException Joblist JobRunner JobStat JobStatus JobSubmissionException JobSubmissionExceptionBean Jpred4 JpredAnnotation JpredResult Jronn JronnWS Jws2Client Limit LimitExceededException LimitExceededExceptionBean LimitsManager LoadBalancer LocalEngineUtil LocalExecutorService LocalRunner Mafft MafftWS Mcl Metadata MetadataHelper MsaWS Muscle MuscleWS NetNglyc OB Option OptionCombinator Pairwise Parameter PathValidator PipedExecutable Preset PresetAlign PresetAlignResponse PresetAnalize PresetAnalizeResponse PresetManager Probcons ProbconsWS Program ProgressGetter PropertyHelperManager PScore PSIBlast PulledFileCache PullExecStatistics PullExecStatisticsResponse Range RegistryWS RegistryWS ResultNotAvailableException ResultNotAvailableExceptionBean Ronn RPSBlast RunConfiguration RunnerConfig RunnerConfigMarshaller Runners Score ScoreManager ScoreManager.ScoreHolder SequenceAnnotation SequenceAnnotationService SequenceUtil Services ServicesUtil ShutdownEngines SimpleWSPublisher SkeletalExecutable SMERFSConstraints StatCollection StatCollection.Stattype StatDB StatisticCollector StatisticManager StatProcessor StreamGobbler SubmissionManager SyncExecutor Tcoffee TcoffeeWS TestAllServices TestAllServicesResponse TestService TestServiceResponse Totals UnknownFileFormatException UnsupportedRuntimeException UnsupportedRuntimeExceptionBean Util Util ValueConstrain ValueConstrain.Type WrongParameterException WrongParameterExceptionBean WSTester WSUtil _Jpred _Key _MsaService _NativeSpecHelper _Queue _SkeletalCommandBuilder _WSLogger