Jalview
Documentation Jalview
Documentation
JalView (1999) is a fast Java multiple alignment editor and analysis tool. It features many of the functions of AMAS, for the analysis of sub-families and the prediction of functional sites, but is fully interactive.
If you use JalView in your work, please cite the bioinformatics paper:
Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview Java Alignment Editor", Bioinformatics, 12, 426-7.