source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	10281	AlignFile.java	blob \| history \| raw
-rw-r--r--	1372	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	1324	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	51919	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	19262	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6217	BLCFile.java	blob \| history \| raw
-rw-r--r--	7021	BSMLFile.java	blob \| history \| raw
-rw-r--r--	1837	BackupFilenameFilter.java	blob \| history \| raw
-rw-r--r--	5221	BackupFilenameParts.java	blob \| history \| raw
-rw-r--r--	30968	BackupFiles.java	blob \| history \| raw
-rw-r--r--	6255	BackupFilesPresetEntry.java	blob \| history \| raw
-rw-r--r--	7947	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6661	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1727	CountReader.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	964	DataSourceType.java	blob \| history \| raw
-rw-r--r--	24037	EMBLLikeFlatFile.java	blob \| history \| raw
-rw-r--r--	4994	EmblFlatFile.java	blob \| history \| raw
-rwxr-xr-x	5072	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	44245	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	11220	FileFormat.java	blob \| history \| raw
-rw-r--r--	1039	FileFormatException.java	blob \| history \| raw
-rw-r--r--	2443	FileFormatI.java	blob \| history \| raw
-rw-r--r--	5140	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	21698	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	21310	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8451	FormatAdapter.java	blob \| history \| raw
-rw-r--r--	4223	GenBankFile.java	blob \| history \| raw
-rw-r--r--	17787	HMMFile.java	blob \| history \| raw
-rw-r--r--	10845	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12776	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	13967	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1503	InputStreamParser.java	blob \| history \| raw
-rw-r--r--	1127	IntKeyStringValueEntry.java	blob \| history \| raw
-rwxr-xr-x	11754	JPredFile.java	blob \| history \| raw
-rw-r--r--	28721	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	17351	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4850	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	4576	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8514	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9548	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10657	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	29185	NewickFile.java	blob \| history \| raw
-rw-r--r--	2214	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5064	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4360	PfamFile.java	blob \| history \| raw
-rw-r--r--	9329	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4406	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6803	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12501	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	18141	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8803	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	42996	StockholmFile.java	blob \| history \| raw
-rw-r--r--	13268	StructureFile.java	blob \| history \| raw
-rw-r--r--	17452	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93930	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8345	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	cache	tree \| history
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history
drwxr-xr-x	-	vcf	tree \| history