Integration of David Corsars Phylip File support
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2588 AMSAFile.java
-rwxr-xr-x 7168 AlignFile.java
-rw-r--r-- 4099 AlignmentProperties.java
-rwxr-xr-x 46251 AnnotationFile.java
-rwxr-xr-x 21249 AppletFormatAdapter.java
-rwxr-xr-x 6209 BLCFile.java
-rw-r--r-- 981 ClansFile.java
-rwxr-xr-x 6385 ClustalFile.java
-rw-r--r-- 1359 DBRefFile.java
-rwxr-xr-x 5103 FastaFile.java
-rwxr-xr-x 31891 FeaturesFile.java
-rwxr-xr-x 13295 FileLoader.java
-rwxr-xr-x 11718 FileParse.java
-rwxr-xr-x 8465 FormatAdapter.java
-rwxr-xr-x 12168 HTMLOutput.java
-rwxr-xr-x 9155 IdentifyFile.java
-rw-r--r-- 1600 InputStreamParser.java
-rwxr-xr-x 11241 JPredFile.java
-rwxr-xr-x 7795 JalviewFileChooser.java
-rwxr-xr-x 3961 JalviewFileFilter.java
-rwxr-xr-x 3207 JalviewFileView.java
-rwxr-xr-x 6495 JnetAnnotationMaker.java
-rwxr-xr-x 9307 MSFfile.java
-rw-r--r-- 1319 MatrixFile.java
-rwxr-xr-x 10331 ModellerDescription.java
-rwxr-xr-x 27046 NewickFile.java
-rwxr-xr-x 4919 PIRFile.java
-rwxr-xr-x 4074 PfamFile.java
-rw-r--r-- 8911 PhylipFile.java
-rwxr-xr-x 4482 PileUpfile.java
-rw-r--r-- 6175 RnamlFile.java
-rw-r--r-- 12000 SequenceAnnotationReport.java
-rw-r--r-- 8642 SimpleBlastFile.java
-rw-r--r-- 36150 StockholmFile.java
-rw-r--r-- 17207 TCoffeeScoreFile.java
-rw-r--r-- 92136 VamsasAppDatastore.java
-rwxr-xr-x 7610 WSWUBlastClient.java
drwxr-xr-x - packed
drwxr-xr-x - vamsas