source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	42	.cvsignore	blob \| history \| raw
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	9743	AlignFile.java	blob \| history \| raw
-rw-r--r--	794	AlignmentFileI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	51820	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	20982	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6272	BLCFile.java	blob \| history \| raw
-rw-r--r--	12330	BioJsHTMLOutput.java	blob \| history \| raw
-rw-r--r--	991	ClansFile.java	blob \| history \| raw
-rwxr-xr-x	6601	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	85	DataSourceType.java	blob \| history \| raw
-rwxr-xr-x	5087	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	34321	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	14718	FileFormat.java	blob \| history \| raw
-rw-r--r--	174	FileFormatException.java	blob \| history \| raw
-rw-r--r--	1320	FileFormatI.java	blob \| history \| raw
-rwxr-xr-x	16803	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	15572	FileParse.java	blob \| history \| raw
-rwxr-xr-x	10384	FormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	12464	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5071	HtmlFile.java	blob \| history \| raw
-rw-r--r--	34468	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	11903	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1610	InputStreamParser.java	blob \| history \| raw
-rwxr-xr-x	11815	JPredFile.java	blob \| history \| raw
-rw-r--r--	29454	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	10540	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4046	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	3268	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8675	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9558	MSFfile.java	blob \| history \| raw
-rw-r--r--	1329	MatrixFile.java	blob \| history \| raw
-rwxr-xr-x	10349	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	27442	NewickFile.java	blob \| history \| raw
-rw-r--r--	1310	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5064	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4432	PfamFile.java	blob \| history \| raw
-rw-r--r--	9375	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4449	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6752	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12240	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8775	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	37400	StockholmFile.java	blob \| history \| raw
-rw-r--r--	11407	StructureFile.java	blob \| history \| raw
-rw-r--r--	17298	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93354	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8186	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history