## CHANGE THIS (The root directory where to store all the log files)  
#logDir = .

## Uncomment to enable JWS2 activity logging to standard out (to the console if available)
## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html 
## Valid log levels are:
## TRACE - log everything from below including very detailed messages (useful for debugging only)
## DEBUG - log everything from below including some minor events (useful for debugging only)
## INFO - log everything from below including some information messages
## WARN - log error and warnings
## ERROR - log errors and fatal events only 
## FATAL - log fatal events only

#log4j.rootLogger=ERROR, stdout
#log4j.appender.stdout=org.apache.log4j.ConsoleAppender
#log4j.appender.stdout.Target=System.out
#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
#log4j.appender.stdout.layout.ConversionPattern=%m%n

## Uncomment to enable JWS2 activity logging to the file
#log4j.logger.compbio=ERROR, ACTIVITY
#log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
#log4j.appender.ACTIVITY.File=${logDir}/activity.log
#log4j.appender.ACTIVITY.MaxFileSize=10MB
#log4j.appender.ACTIVITY.MaxBackupIndex=10000
#log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout
#log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n

## Uncomment for web access logging. Please do not change the log level!
#log4j.logger.ClustalWS-stats=INFO, STAT
#log4j.logger.MuscleWS-stats=INFO, STAT
#log4j.logger.TcoffeeWS-stats=INFO, STAT
#log4j.logger.MafftWS-stats=INFO, STAT
#log4j.logger.ProbconsWS-stats=INFO, STAT
#log4j.appender.STAT=org.apache.log4j.RollingFileAppender
#log4j.appender.STAT.File=${logDir}/wsaccess.log
#log4j.appender.STAT.MaxFileSize=10MB
#log4j.appender.STAT.MaxBackupIndex=10000
#log4j.appender.STAT.layout=org.apache.log4j.PatternLayout
#log4j.appender.STAT.layout.ConversionPattern=%t %d %m%n

## Uncomment for separate local engine execution log (debugging only)
#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C
#log4j.appender.C=org.apache.log4j.FileAppender
#log4j.appender.C.File=LocalExecutorService.log
#log4j.appender.C.layout=org.apache.log4j.PatternLayout
#log4j.appender.C.layout.ConversionPattern=%m%n

## Parameter combinator logger (testing only)
#log4j.logger.RunnerLogger=ERROR, RUNNER
#log4j.appender.RUNNER=org.apache.log4j.FileAppender
#log4j.appender.RUNNER.File=RunnerParam.log 
#log4j.appender.RUNNER.layout=org.apache.log4j.PatternLayout
#log4j.appender.RUNNER.layout.ConversionPattern=%r [%t] %p %c %x - %m%n


## NOT IN USE - collection of patterns choose the one that suits you
# %d{ABSOLUTE} %5p %c{1}:%L -
#log4j.appender.C.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
# %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 
#log4j.appender.ClustalWS-stats.layout.ConversionPattern=%p %d %t %C{4} %m%n