/* Copyright (c) 2011 Peter Troshin * * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 * * This library is free software; you can redistribute it and/or modify it under the terms of the * Apache License version 2 as published by the Apache Software Foundation * * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache * License for more details. * * A copy of the license is in apache_license.txt. It is also available here: * @see: http://www.apache.org/licenses/LICENSE-2.0.txt * * Any republication or derived work distributed in source code form * must include this copyright and license notice. */ package compbio.runner._impl; /** * Utility class for common Blast parameters * * @author pvtroshin TODO */ public class BlastParameters { private BlastParameters() { } // prevent instantiation static String outputName = "output.blast"; static String outputProfileName = "output.profile"; static final String parInput = "-i"; static final String parDatabase = "-d "; static final String parOutput = "-o"; static final String parEvalue = "-e"; final static String parDel = " "; static final String parAlView = "-m 9"; }