Constant Field Values

Contents

• compbio.data.*
• compbio.metadata.*
• compbio.ws.*

compbio.data.*

compbio.data.msa.Category

public static final java.lang.String	CATEGORY_ALIGNMENT	"Alignment"
public static final java.lang.String	CATEGORY_CONSERVATION	"Conservation"
public static final java.lang.String	CATEGORY_DISORDER	"Protein Disorder"

compbio.data.msa.JABAService

public static final java.lang.String	SERVICE_NAMESPACE	"http://msa.data.compbio/01/01/2010/"
public static final java.lang.String	V2_SERVICE_NAMESPACE	"http://msa.data.compbio/01/12/2010/"

compbio.data.sequence.ClustalAlignmentUtil

public static final char

gapchar

45

compbio.data.sequence.ScoreManager

public static final java.lang.String

SINGLE_ENTRY_KEY

"Alignment"

compbio.data.sequence.SMERFSConstraints

public static final double	DEFAULT_GAP_THRESHOLD	0.1
public static final int	DEFAULT_WINDOW_SIZE	7

compbio.metadata.*

compbio.metadata.PresetManager<T>

public static final java.lang.String

LOCAL_ENGINE_LIMIT_PRESET

"# LocalEngineExecutionLimit #"

compbio.ws.*

compbio.ws.client.WSTester

public static final java.lang.String	fastaAlignment	">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV--------\n>Bar\nASDAAPEH------------PGIALWLHALE-DAGQAEAAA---AYTRAHQLLPEEPYITAQLLNAVA\n"
public static final java.lang.String	fastaInput	">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\n>Bar\nASDAAPEHPGIALWLHALEDAGQAEAAAAYTRAHQLLPEEPYITAQLLNAVA\n"