compbio.data.sequence
Enum ConservationMethod

java.lang.Object
  java.lang.Enum<ConservationMethod>
      compbio.data.sequence.ConservationMethod

All Implemented Interfaces:

Serializable, Comparable<ConservationMethod>

public enum ConservationMethod
extends Enum<ConservationMethod>

Enumeration listing of all the supported methods.

Author:

Agnieszka Golicz & Peter Troshin

Enum Constant Summary

ARMON

GERSTEIN

JORES

KABAT

KARLIN

LANDGRAF

MIRNY

NOT_LANCET

SANDER

SCHNEIDER

SHENKIN

SMERFS

TAYLOR_GAPS

TAYLOR_NO_GAPS

THOMPSON

VALDAR

WILLIAMSON

ZVELIBIL

Method Summary

static ConservationMethod	getMethod(String meth)
static ConservationMethod	valueOf(String name) Returns the enum constant of this type with the specified name.
static ConservationMethod[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

KABAT

public static final ConservationMethod KABAT

JORES

public static final ConservationMethod JORES

SCHNEIDER

public static final ConservationMethod SCHNEIDER

SHENKIN

public static final ConservationMethod SHENKIN

GERSTEIN

public static final ConservationMethod GERSTEIN

TAYLOR_GAPS

public static final ConservationMethod TAYLOR_GAPS

TAYLOR_NO_GAPS

public static final ConservationMethod TAYLOR_NO_GAPS

ZVELIBIL

public static final ConservationMethod ZVELIBIL

KARLIN

public static final ConservationMethod KARLIN

ARMON

public static final ConservationMethod ARMON

THOMPSON

public static final ConservationMethod THOMPSON

NOT_LANCET

public static final ConservationMethod NOT_LANCET

MIRNY

public static final ConservationMethod MIRNY

WILLIAMSON

public static final ConservationMethod WILLIAMSON

LANDGRAF

public static final ConservationMethod LANDGRAF

SANDER

public static final ConservationMethod SANDER

VALDAR

public static final ConservationMethod VALDAR

SMERFS

public static final ConservationMethod SMERFS

Method Detail

values

public static ConservationMethod[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ConservationMethod c : ConservationMethod.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ConservationMethod valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getMethod

public static ConservationMethod getMethod(String meth)