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| Packages that use compbio.data.sequence | |
|---|---|
| compbio.data.msa | Web Service interfaces for JAva Bioinformatics Analysis Web Services. |
| compbio.data.msa.jaxws | |
| compbio.data.sequence | A data model for multiple sequence alignment web services and utility methods that work on the objects of this model. |
| compbio.engine | |
| compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
| compbio.pipeline._jpred | |
| compbio.runner | Utilities commonly used by all runners. |
| compbio.runner.conservation | |
| compbio.runner.disorder | |
| compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
| compbio.ws.server | |
| Classes in compbio.data.sequence used by compbio.data.msa | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| FastaSequence
A FASTA formatted sequence. |
|
| ScoreManager
|
|
| Classes in compbio.data.sequence used by compbio.data.msa.jaxws | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| FastaSequence
A FASTA formatted sequence. |
|
| ScoreManager
|
|
| Classes in compbio.data.sequence used by compbio.data.sequence | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| AlignmentMetadata
Alignment metadata e.g. |
|
| ConservationMethod
Enumeration listing of all the supported methods. |
|
| DisorderMethod
|
|
| FastaSequence
A FASTA formatted sequence. |
|
| Program
The list of programmes that can produce alignments |
|
| Range
|
|
| Score
A value class for AACon annotation results storage. |
|
| ScoreManager
|
|
| ScoreManager.ScoreHolder
|
|
| SMERFSConstraints
Enumeration defining two constraints for SMERFS columns score calculation. |
|
| UnknownFileFormatException
|
|
| Classes in compbio.data.sequence used by compbio.engine | |
|---|---|
| FastaSequence
A FASTA formatted sequence. |
|
| Classes in compbio.data.sequence used by compbio.metadata | |
|---|---|
| FastaSequence
A FASTA formatted sequence. |
|
| Classes in compbio.data.sequence used by compbio.pipeline._jpred | |
|---|---|
| FastaSequence
A FASTA formatted sequence. |
|
| Classes in compbio.data.sequence used by compbio.runner | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| FastaSequence
A FASTA formatted sequence. |
|
| Score
A value class for AACon annotation results storage. |
|
| UnknownFileFormatException
|
|
| Classes in compbio.data.sequence used by compbio.runner.conservation | |
|---|---|
| ScoreManager
|
|
| Classes in compbio.data.sequence used by compbio.runner.disorder | |
|---|---|
| ScoreManager
|
|
| Classes in compbio.data.sequence used by compbio.runner.msa | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| Classes in compbio.data.sequence used by compbio.ws.server | |
|---|---|
| Alignment
Multiple sequence alignment. |
|
| FastaSequence
A FASTA formatted sequence. |
|
| ScoreManager
|
|
|
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