compbio.engine
Class Configurator

java.lang.Object
  compbio.engine.Configurator

public class Configurator
extends Object

Field Summary

static String	CLUSTER_WORK_DIRECTORY
static boolean	IS_CLUSTER_ENGINE_ENABLED
static boolean	IS_LOCAL_ENGINE_ENABLED
static String	LOCAL_WORK_DIRECTORY

Constructor Summary

Configurator()

Method Summary

static <T> ConfiguredExecutable<T>	configureExecutable(Executable<T> executable)
static <T> ConfiguredExecutable<T>	configureExecutable(Executable<T> executable, Executable.ExecProvider provider)
static <T> ConfiguredExecutable<T>	configureExecutable(Executable<T> executable, List<FastaSequence> dataSet)
static AsyncExecutor	getAsyncEngine(ConfiguredExecutable<?> executable)
static AsyncExecutor	getAsyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)
static AsyncExecutor	getAsyncEngine(String taskId)
static SyncExecutor	getSyncEngine(ConfiguredExecutable<?> executable)
static SyncExecutor	getSyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)
static String	getWorkDirectory(String taskId)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IS_LOCAL_ENGINE_ENABLED

public static final boolean IS_LOCAL_ENGINE_ENABLED

IS_CLUSTER_ENGINE_ENABLED

public static final boolean IS_CLUSTER_ENGINE_ENABLED

LOCAL_WORK_DIRECTORY

public static final String LOCAL_WORK_DIRECTORY

CLUSTER_WORK_DIRECTORY

public static final String CLUSTER_WORK_DIRECTORY

Constructor Detail

Configurator

public Configurator()

Method Detail

configureExecutable

public static <T> ConfiguredExecutable<T> configureExecutable(Executable<T> executable)
                                                   throws JobSubmissionException

Throws:

JobSubmissionException

configureExecutable

public static <T> ConfiguredExecutable<T> configureExecutable(Executable<T> executable,
                                                              List<FastaSequence> dataSet)
                                                   throws JobSubmissionException

Throws:

JobSubmissionException

configureExecutable

public static <T> ConfiguredExecutable<T> configureExecutable(Executable<T> executable,
                                                              Executable.ExecProvider provider)
                                                   throws JobSubmissionException

Throws:

JobSubmissionException

getAsyncEngine

public static AsyncExecutor getAsyncEngine(ConfiguredExecutable<?> executable,
                                           Executable.ExecProvider provider)

getSyncEngine

public static SyncExecutor getSyncEngine(ConfiguredExecutable<?> executable,
                                         Executable.ExecProvider provider)
                                  throws JobSubmissionException

Throws:

JobSubmissionException

getAsyncEngine

public static AsyncExecutor getAsyncEngine(ConfiguredExecutable<?> executable)

getAsyncEngine

public static AsyncExecutor getAsyncEngine(String taskId)

getSyncEngine

public static SyncExecutor getSyncEngine(ConfiguredExecutable<?> executable)
                                  throws JobSubmissionException

Throws:

JobSubmissionException

getWorkDirectory

public static String getWorkDirectory(String taskId)