compbio.engine.client
Interface ConfiguredExecutable<T>

All Superinterfaces:

Executable<T>, PipedExecutable<T>

All Known Implementing Classes:

ConfExecutable

public interface ConfiguredExecutable<T>
extends Executable<T>, PipedExecutable<T>

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Method Summary

String	getCommand(Executable.ExecProvider provider)
Map<String,String>	getEnvironment()
Executable.ExecProvider	getExecProvider()
Executable<T>	getExecutable()
CommandBuilder<T>	getParameters()
<V> V	getResults()
Executable.ExecProvider	getSupportedRuntimes()
String	getTaskId()
String	getWorkDirectory()
ConfiguredExecutable<?>	loadRunConfiguration(InputStream input)
boolean	saveRunConfiguration()
void	setWorkDirectory(String workDirectory)

Methods inherited from interface compbio.engine.client.Executable

addParameters, getClusterJobSettings, getCreatedFiles, getError, getInput, getLimit, getLimits, getOutput, getParameters, getResults, loadRunConfiguration

Method Detail

getEnvironment

Map<String,String> getEnvironment()

getTaskId

String getTaskId()

getCommand

String getCommand(Executable.ExecProvider provider)
                  throws JobSubmissionException

Throws:

JobSubmissionException

getSupportedRuntimes

Executable.ExecProvider getSupportedRuntimes()

getWorkDirectory

String getWorkDirectory()

setWorkDirectory

void setWorkDirectory(String workDirectory)

getResults

<V> V getResults()
             throws ResultNotAvailableException

Throws:

ResultNotAvailableException

getExecutable

Executable<T> getExecutable()

getParameters

CommandBuilder<T> getParameters()

saveRunConfiguration

boolean saveRunConfiguration()
                             throws IOException

Throws:

IOException

loadRunConfiguration

ConfiguredExecutable<?> loadRunConfiguration(InputStream input)
                                             throws IOException

Throws:

IOException

getExecProvider

Executable.ExecProvider getExecProvider()