Uses of Class
compbio.engine.client.Executable.ExecProvider

Packages that use Executable.ExecProvider

compbio.engine
compbio.engine.client
compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl
compbio.runner.conservation
compbio.runner.disorder
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)

Uses of Executable.ExecProvider in compbio.engine

Methods in compbio.engine that return Executable.ExecProvider

static Executable.ExecProvider	LoadBalancer.getEngine(Executable<?> executable)
static <T,V> Executable.ExecProvider	LoadBalancer.getEngine(Executable<V> executable, List<FastaSequence> dataSet)

Methods in compbio.engine with parameters of type Executable.ExecProvider

static <T> ConfiguredExecutable<T>	Configurator.configureExecutable(Executable<T> executable, Executable.ExecProvider provider)
static AsyncExecutor	Configurator.getAsyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)
static SyncExecutor	Configurator.getSyncEngine(ConfiguredExecutable<?> executable, Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.engine.client

Methods in compbio.engine.client that return Executable.ExecProvider

Executable.ExecProvider	ConfiguredExecutable.getExecProvider()
Executable.ExecProvider	ConfExecutable.getExecProvider()
Executable.ExecProvider	ConfiguredExecutable.getSupportedRuntimes()
Executable.ExecProvider	ConfExecutable.getSupportedRuntimes()
static Executable.ExecProvider	Util.getSupportedRuntimes(Class<?> clazz)
static Executable.ExecProvider	Executable.ExecProvider.valueOf(String name) Returns the enum constant of this type with the specified name.
static Executable.ExecProvider[]	Executable.ExecProvider.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in compbio.engine.client with parameters of type Executable.ExecProvider

String	ConfiguredExecutable.getCommand(Executable.ExecProvider provider)
String	ConfExecutable.getCommand(Executable.ExecProvider provider)
static String	Util.getCommand(Executable.ExecProvider provider, Class<?> clazz)
CommandBuilder<T>	Executable.getParameters(Executable.ExecProvider provider)
CommandBuilder<T>	SkeletalExecutable.getParameters(Executable.ExecProvider provider)
CommandBuilder<T>	ConfExecutable.getParameters(Executable.ExecProvider provider)
void	ConfExecutable.setExecProvider(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner

Methods in compbio.runner with parameters of type Executable.ExecProvider

CommandBuilder<_SkeletalCommandBuilder>

_SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider) Deprecated.

Uses of Executable.ExecProvider in compbio.runner._impl

Methods in compbio.runner._impl with parameters of type Executable.ExecProvider

String	RPSBlast.getCommand(Executable.ExecProvider provider)
String	PSIBlast.getCommand(Executable.ExecProvider provider)
String	Ronn.getCommand(Executable.ExecProvider provider)
String	Mcl.getCommand(Executable.ExecProvider provider)
String	BlastAll.getCommand(Executable.ExecProvider provider)
CommandBuilder<NetNglyc>	NetNglyc.getParameters(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.conservation

Methods in compbio.runner.conservation with parameters of type Executable.ExecProvider

CommandBuilder<AACon>

AACon.getParameters(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.disorder

Methods in compbio.runner.disorder with parameters of type Executable.ExecProvider

CommandBuilder<Jronn>

Jronn.getParameters(Executable.ExecProvider provider)

Uses of Executable.ExecProvider in compbio.runner.msa

Methods in compbio.runner.msa with parameters of type Executable.ExecProvider

CommandBuilder<Tcoffee>	Tcoffee.getParameters(Executable.ExecProvider provider)
CommandBuilder<ClustalO>	ClustalO.getParameters(Executable.ExecProvider provider)