Uses of Class
compbio.metadata.Limit

Packages that use Limit

compbio.data.msa
compbio.data.msa.jaxws
compbio.engine.client	Classes and interfaces representing an input for engines.
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.runner.psiblast
compbio.ws.server

Uses of Limit in compbio.data.msa

Methods in compbio.data.msa that return Limit

Limit<T>

MsaWS.getLimit(java.lang.String presetName) Get a Limit for a preset.

Uses of Limit in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return Limit

Limit

GetLimitResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type Limit

void	GetLimitResponse.setReturn(Limit _return)

Uses of Limit in compbio.engine.client

Methods in compbio.engine.client that return Limit

Limit<T>	Executable.getLimit(java.lang.String presetName)
Limit<T>	ConfExecutable.getLimit(java.lang.String presetName)

Uses of Limit in compbio.metadata

Methods in compbio.metadata that return Limit

Limit<T>	LimitsManager.getDefaultLimit()
Limit<T>	LimitsManager.getLimitByName(java.lang.String presetName)

Methods in compbio.metadata that return types with arguments of type Limit

java.util.List<Limit<T>>

LimitsManager.getLimits()

Methods in compbio.metadata with parameters of type Limit

static LimitExceededException

LimitExceededException.newLimitExceeded(Limit<?> limit, java.util.List<FastaSequence> seqs)

Uses of Limit in compbio.runner

Methods in compbio.runner that return Limit

Limit<_SkeletalCommandBuilder>

_SkeletalCommandBuilder.getLimit(java.lang.String presetName)

Uses of Limit in compbio.runner._impl

Methods in compbio.runner._impl that return Limit

Limit<NetNglyc>

NetNglyc.getLimit(java.lang.String presetName)

Uses of Limit in compbio.runner.msa

Methods in compbio.runner.msa that return Limit

Limit<Tcoffee>	Tcoffee.getLimit(java.lang.String presetName)
Limit<ClustalW>	ClustalW.getLimit(java.lang.String presetName)
Limit<Probcons>	Probcons.getLimit(java.lang.String presetName)
Limit<Muscle>	Muscle.getLimit(java.lang.String presetName)
Limit<Mafft>	Mafft.getLimit(java.lang.String presetName)

Uses of Limit in compbio.runner.psiblast

Methods in compbio.runner.psiblast that return Limit

Limit<PsiBlast>

PsiBlast.getLimit(java.lang.String presetName)

Uses of Limit in compbio.ws.server

Methods in compbio.ws.server that return Limit

Limit<Tcoffee>	TcoffeeWS.getLimit(java.lang.String presetName)
Limit<Probcons>	ProbconsWS.getLimit(java.lang.String presetName)
Limit<Muscle>	MuscleWS.getLimit(java.lang.String presetName)
Limit<Mafft>	MafftWS.getLimit(java.lang.String presetName)
Limit<ClustalW>	ClustalWS.getLimit(java.lang.String presetName)

Methods in compbio.ws.server with parameters of type Limit

static <T> java.lang.String

WSUtil.align(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger statLog, javax.xml.ws.WebServiceContext wsContext, java.lang.String callingMethod, Limit<T> limit)