compbio.runner._impl
Class Mcl

java.lang.Object
  compbio.runner._SkeletalCommandBuilder
      compbio.runner._impl.Mcl

All Implemented Interfaces:

Executable<_SkeletalCommandBuilder>

public class Mcl
extends _SkeletalCommandBuilder

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Constructor Summary

Mcl(java.lang.String workDirectory)

Method Summary

java.lang.String	getCommand(Executable.ExecProvider provider)
java.lang.String	getCommandName()
java.util.List<java.lang.String>	getCreatedFiles()
java.lang.String	getInput()
static java.lang.String	getTestCommand()
static java.util.List<java.lang.String>	getTestParams()

Methods inherited from class compbio.runner._SkeletalCommandBuilder

addParameter, addParameters, addParameters, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mcl

public Mcl(java.lang.String workDirectory)

Method Detail

getTestParams

public static java.util.List<java.lang.String> getTestParams()

getCommand

public java.lang.String getCommand(Executable.ExecProvider provider)

getTestCommand

public static java.lang.String getTestCommand()

getCommandName

public java.lang.String getCommandName()

getCreatedFiles

public java.util.List<java.lang.String> getCreatedFiles()

getInput

public java.lang.String getInput()