Uses of Class
compbio.runner.msa.ClustalW

Packages that use ClustalW

compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Uses of ClustalW in compbio.runner.msa

Methods in compbio.runner.msa that return ClustalW

ClustalW	ClustalW.setInput(java.lang.String inFile)
ClustalW	ClustalW.setOutput(java.lang.String outFile)

Methods in compbio.runner.msa that return types with arguments of type ClustalW

Limit<ClustalW>	ClustalW.getLimit(java.lang.String presetName)
LimitsManager<ClustalW>	ClustalW.getLimits()

Uses of ClustalW in compbio.ws.server

Methods in compbio.ws.server that return types with arguments of type ClustalW

Limit<ClustalW>	ClustalWS.getLimit(java.lang.String presetName)
LimitsManager<ClustalW>	ClustalWS.getLimits()
PresetManager<ClustalW>	ClustalWS.getPresets()
RunnerConfig<ClustalW>	ClustalWS.getRunnerOptions()

Method parameters in compbio.ws.server with type arguments of type ClustalW

java.lang.String	ClustalWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<ClustalW>> options)
java.lang.String	ClustalWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalW> preset)