A B C D E F G H I J K L M N O P R S T U V W _

M

Mafft - Class in compbio.runner.msa

Mafft() - Constructor for class compbio.runner.msa.Mafft

MafftWS - Class in compbio.ws.server

MafftWS() - Constructor for class compbio.ws.server.MafftWS

main(String[]) - Static method in class compbio.pipeline._jpred.BlastBlastComparator

args[0] is assumed to be the name of a Blast output file

main(String[]) - Static method in class compbio.pipeline._jpred.BlastHmmerComparator

args[0] is assumed to be the name of a Blast output file

main(String[]) - Static method in class compbio.pipeline._jpred.BlastParser

args[0] is assumed to be the name of a Blast output file

main(String[]) - Static method in class compbio.pipeline._jpred.JackHmmerHitParser

main(String[]) - Static method in class compbio.pipeline._jpred.Pairwise

main(String[]) - Static method in class compbio.runner._impl.OB

main(String[]) - Static method in class compbio.stat.collector.ExecutionStatCollector

Not in use

main(String[]) - Static method in class compbio.stat.collector.StatDB

main(String[]) - Static method in class compbio.ws.client.AAConClient

Starts command line client, if no parameters are supplied prints help.

main(String[]) - Static method in class compbio.ws.client.Jws2Client

Starts command line client, if no parameter are supported print help.

main(String[]) - Static method in class compbio.ws.client.WSTester

Test JWS2 web services

main(String[]) - Static method in class compbio.ws.server.SimpleWSPublisher

Deprecated.

Mcl - Class in compbio.runner._impl

Mcl(String) - Constructor for class compbio.runner._impl.Mcl

mergeEnvVariables(Map<String, String>, Map<String, String>) - Static method in class compbio.engine.client.Util

Metadata<T> - Interface in compbio.data.msa

MetadataHelper - Class in compbio.ws.client

MetadataHelper() - Constructor for class compbio.ws.client.MetadataHelper

MsaWS<T> - Interface in compbio.data.msa

Multiple Sequence Alignment (MSA) Web Services Interface

Muscle - Class in compbio.runner.msa

Muscle() - Constructor for class compbio.runner.msa.Muscle

Default options are -clwstrict - write output in clustal format

MuscleWS - Class in compbio.ws.server

MuscleWS() - Constructor for class compbio.ws.server.MuscleWS