A B C D E F G H I J K L M N O P R S T U V W _

O

OB - Class in compbio.runner._impl

TODO this needs fixing! Executable does not work

OB() - Constructor for class compbio.runner._impl.OB

OB(String) - Constructor for class compbio.runner._impl.OB

openInputStream(String) - Static method in class compbio.data.sequence.SequenceUtil

Reads and parses Fasta or Clustal formatted file into a list of FastaSequence objects

Option<T> - Class in compbio.metadata

Command line option/flag or multiple exclusive options with no value.

Option(String, String) - Constructor for class compbio.metadata.Option

OptionCombinator - Class in compbio.runner

This class solve the following problems.

OptionCombinator(RunnerConfig<? extends Executable<?>>) - Constructor for class compbio.runner.OptionCombinator

optionsToCommandString(List<Option<?>>) - Method in class compbio.runner.OptionCombinator

OUTPUT - Static variable in class compbio.engine.client.SkeletalExecutable