A B C D E F G H I J K L M N O P R S T U V W _

T

Tcoffee - Class in compbio.runner.msa

Tcoffee() - Constructor for class compbio.runner.msa.Tcoffee

TcoffeeWS - Class in compbio.ws.server

TcoffeeWS() - Constructor for class compbio.ws.server.TcoffeeWS

termSignal() - Method in class compbio.engine.cluster.drmaa.StatisticManager

TestAllServices - Class in compbio.data.msa.jaxws

TestAllServices() - Constructor for class compbio.data.msa.jaxws.TestAllServices

testAllServices() - Method in interface compbio.data.msa.RegistryWS

Test all JABAWS services on the server

testAllServices() - Method in class compbio.ws.server.RegistryWS

TODO improve reporting.

TestAllServicesResponse - Class in compbio.data.msa.jaxws

TestAllServicesResponse() - Constructor for class compbio.data.msa.jaxws.TestAllServicesResponse

TestService - Class in compbio.data.msa.jaxws

TestService() - Constructor for class compbio.data.msa.jaxws.TestService

testService(Services) - Method in interface compbio.data.msa.RegistryWS

Test a particular service

testService(String, Services, PrintWriter) - Static method in class compbio.ws.client.Jws2Client

Asks registry to test the service on the host hostname

testService(Services) - Method in class compbio.ws.server.RegistryWS

TestServiceResponse - Class in compbio.data.msa.jaxws

TestServiceResponse() - Constructor for class compbio.data.msa.jaxws.TestServiceResponse

to - Variable in class compbio.data.sequence.Range

toCommand(String) - Method in class compbio.metadata.Option

Convert the option to the command string.

toCommand(String) - Method in class compbio.metadata.Parameter

toString() - Method in class compbio.data.sequence.Alignment

toString() - Method in class compbio.data.sequence.FastaSequence

Same as oneLineFasta

toString() - Method in class compbio.data.sequence.Range

toString() - Method in class compbio.data.sequence.Score

toString() - Method in class compbio.engine.client.CommandBuilder

toString() - Method in class compbio.engine.client.ConfExecutable

toString() - Method in class compbio.engine.client.RunConfiguration

toString() - Method in class compbio.engine.client.SkeletalExecutable

toString() - Method in class compbio.engine.cluster.drmaa.StatisticManager

toString() - Method in enum compbio.engine.cluster.dundee._Queue

Deprecated.

toString() - Method in class compbio.engine.conf._Key

Deprecated.

toString() - Method in class compbio.engine.FilePuller

toString() - Method in class compbio.engine.Job

toString() - Method in class compbio.metadata.ChunkHolder

toString() - Method in class compbio.metadata.Limit

toString() - Method in class compbio.metadata.LimitsManager

toString() - Method in class compbio.metadata.Option

toString() - Method in class compbio.metadata.Parameter

toString() - Method in class compbio.metadata.Preset

toString() - Method in class compbio.metadata.PresetManager

toString() - Method in class compbio.metadata.RunnerConfig

toString() - Method in class compbio.metadata.ValueConstrain

toString() - Method in class compbio.pipeline._jpred.Hit

toString() - Method in class compbio.pipeline._jpred.PScore

toString() - Method in class compbio.stat.collector.JobStat

toString() - Method in class compbio.stat.collector.StatProcessor

toString() - Method in class compbio.stat.servlet.util.StatCollection

toString(Set<Services>) - Static method in enum compbio.ws.client.Services

Totals - Class in compbio.stat.servlet.util

Totals() - Constructor for class compbio.stat.servlet.util.Totals