X-Git-Url: http://source.jalview.org/gitweb/?p=jabaws.git;a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fclient%2FServices.java;h=3616e1b5a97a95a775ac5297c3c478e057ca1831;hp=893117fab5aa29bf9d7114c9a739a2897bd5dabd;hb=140e024c6b00451dd933a9c25feac2d170d5f9f6;hpb=0d3b931076cf21ff2800c2de77d72f81efa5a7e5

diff --git a/webservices/compbio/ws/client/Services.java b/webservices/compbio/ws/client/Services.java
index 893117f..3616e1b 100644
--- a/webservices/compbio/ws/client/Services.java
+++ b/webservices/compbio/ws/client/Services.java
@@ -99,4 +99,122 @@ public enum Services {
 				this.toString() + "Port");
 		return service.getPort(portName, this.getServiceType());
 	}
+
+	public String getServiceInfo() {
+		switch (this) {
+			case AAConWS :
+				return AACON_INFO;
+			case ClustalOWS :
+				return CLUSTAL_OMEGA_INFO;
+			case ClustalWS :
+				return CLUSTAL_INFO;
+			case DisemblWS :
+				return DISEMBL_INFO;
+			case GlobPlotWS :
+				return GLOBPLOT_INFO;
+			case IUPredWS :
+				return IUPRED_INFO;
+			case JronnWS :
+				return JRONN_INFO;
+			case MafftWS :
+				return MAFFT_INFO;
+			case MuscleWS :
+				return MUSCLE_INFO;
+			case ProbconsWS :
+				return PROBCONS_INFO;
+			case TcoffeeWS :
+				return TCOFFEE_INFO;
+			default :
+				throw new RuntimeException("Unrecognised Web Service Type "
+						+ this + " - Should never happened!");
+		}
+	}
+
+	public static final String AACON_INFO = new ServiceInfo(AAConWS,
+			"in preparation", "1.0", "http://www.compbio.dundee.ac.uk/aacon")
+			.toString();
+	public static final String CLUSTAL_INFO = new ServiceInfo(
+			ClustalWS,
+			"Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.\r\n"
+					+ "(2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948. ",
+			"2.0.12", "http://www.clustal.org/clustal2/").toString();
+	public static final String CLUSTAL_OMEGA_INFO = new ServiceInfo(
+			ClustalOWS,
+			"Fast, scalable generation of high quality protein multiple sequence alignments using Clustal Omega\r\n"
+					+ "Fabian Sievers, Andreas Wilm, David Dineen, Toby J. Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes Söding, Julie D. Thompson, Desmond G. Higgins",
+			"1.0.2", "http://www.clustal.org/omega").toString();
+	public static final String DISEMBL_INFO = new ServiceInfo(
+			DisemblWS,
+			"R. Linding, L.J. Jensen, F. Diella, P. Bork, T.J. Gibson and R.B. Russell\r\n"
+					+ "Protein disorder prediction: implications for structural proteomics\r\n"
+					+ "Structure Vol 11, Issue 11, 4 November 2003", "1.5",
+			"http://dis.embl.de/").toString();
+	public static final String GLOBPLOT_INFO = new ServiceInfo(
+			GlobPlotWS,
+			"Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson "
+					+ "'GlobPlot: exploring protein sequences for globularity and disorder.' Nucl. Acids Res. (2003) 31 (13): 3701-3708. doi: 10.1093/nar/gkg519\r\n",
+			"2.3", "http://globplot.embl.de/").toString();
+	public static final String IUPRED_INFO = new ServiceInfo(
+			IUPredWS,
+			"The Pairwise Energy Content Estimated from Amino Acid Composition Discriminates between Folded and Intrinsically Unstructured Proteins\r\n"
+					+ "Zsuzsanna Dosztányi, Veronika Csizmók, Péter Tompa and István Simon\r\n"
+					+ "J. Mol. Biol. (2005) 347, 827-839.", "1.0",
+			"http://iupred.enzim.hu/").toString();
+	public static final String TCOFFEE_INFO = new ServiceInfo(TcoffeeWS,
+			"T-Coffee: A novel method for multiple sequence alignments  "
+					+ "Notredame, Higgins, Heringa, JMB, 302 (205-217) 2000",
+			"8.99", "http://tcoffee.crg.cat/apps/tcoffee/index.html")
+			.toString();
+	public static final String MUSCLE_INFO = new ServiceInfo(
+			MuscleWS,
+			"Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput.Nucleic Acids Res. 32(5):1792-1797.\r\n"
+					+ "doi:10.1093/nar/gkh340", "3.8.31",
+			"http://www.drive5.com/muscle/").toString();
+	public static final String PROBCONS_INFO = new ServiceInfo(
+			ProbconsWS,
+			"Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: "
+					+ "Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340. ",
+			"1.12", "http://probcons.stanford.edu/").toString();;
+	public static final String JRONN_INFO = new ServiceInfo(
+			JronnWS,
+			"unpublished, original algorithm Yang,Z.R., Thomson,R., McMeil,P. and Esnouf,R.M. (2005) "
+					+ "RONN: the bio-basis function neural network technique applied to the "
+					+ "dectection of natively disordered regions in proteins Bioinformatics 21: 3369-3376\r\n",
+			"1.0", "http://www.compbio.dundee.ac.uk/jabaws/").toString();;
+	public static final String MAFFT_INFO = new ServiceInfo(
+			MafftWS,
+			"Katoh, Toh 2010 (Bioinformatics 26:1899-1900)\r\n"
+					+ "Parallelization of the MAFFT multiple sequence alignment program. ",
+			"6.8.57", "http://mafft.cbrc.jp/alignment/software/").toString();;
+
+	static class ServiceInfo {
+		Services service;
+		String reference;
+		String version;
+		String moreinfo;
+		final static String jabaws_version = "2.0";
+		final static String line_delimiter = "\n";
+
+		private ServiceInfo(Services service, String reference, String version,
+				String moreinfo) {
+			this.service = service;
+			this.reference = reference;
+			this.version = version;
+			this.moreinfo = moreinfo;
+		}
+
+		@Override
+		public String toString() {
+			String value = "SERVICE: " + service + " version " + version
+					+ line_delimiter;
+			value += "JABAWS v. " + jabaws_version + line_delimiter;
+			value += "REFERENCES: " + reference + line_delimiter;
+			value += "MORE INFORMATION: " + moreinfo + line_delimiter;
+			return value;
+		}
+	}
+
+	public static void main(String[] args) {
+		System.out.println(MUSCLE_INFO);
+	}
 }
\ No newline at end of file