X-Git-Url: http://source.jalview.org/gitweb/?p=jabaws.git;a=blobdiff_plain;f=website%2Fmanual_qs_war.html;h=9ce395146cd2ab8043c4308a62b47d1a83153567;hp=5dc65c3e443fceb018c1f65fe641a6ec1bc67234;hb=a2cffcf92327725d8fc8abfd49d032176be4e86a;hpb=09c859acd393362b835e920ef94c8be4f75af736

diff --git a/website/manual_qs_war.html b/website/manual_qs_war.html
index 5dc65c3..9ce3951 100644
--- a/website/manual_qs_war.html
+++ b/website/manual_qs_war.html
@@ -26,8 +26,9 @@
     <a class="selected" href="quick_start.html">Getting Started</a> 
     <a href="man_about.html">Manual</a> 
 	<a href="download.html">Download</a>
-	<a href="contacts.html">Contact Us</a>
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>
+	<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>
+	<a href="contacts.html">Contact Us</a>
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>
 
 </div><!-- panel end-->
@@ -49,7 +50,7 @@
 </tr>
 <tr>
   <td>Running JABAWS  on the <strong>cloud</strong>, for one or many users</td>
-  <td><a href="man_awscloud.html">JABAWS AMI</a></td>
+  <td><a href="man_awscloud.html">JABAWS on the Amazon cloud </a></td>
 </tr>
 <tr>
 	<td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>
@@ -74,24 +75,25 @@
   <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>
   <li>(Re)start the Tomcat.</li>
   <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>
-  <li>You then need to complete the installation of the executable binaries:</li>
+  <li> You then need to complete the installation of the executable binaries (this is optional if you use 32 bit version of Linux):</li>
    <ul>
      <li>If you are on Linux or Mac (OSX intel Mac only) <br/>
        <span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./setexecflag.sh </span> script to ensure the JABAWS binaries can be executed. </li>
-  	<li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>
-  	<li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>
-  <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>
-  </ul>
+     <li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>
+     <li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>
+     <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>
+   </ul>
 </ol> 
 
 <h3>Testing</h3>
-<p>You can test that your JABAWS server is working in two ways.</p>
+<p>You can test that your JABAWS server is working in several ways.</p>
 <ol>
+<li>Visit Services Status page available from the main menu using your web browser.</li>
+
 <li>If you are working on the command line, then use the command line client shipped with the JABAWS war to test it by running:
-<span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>
-In this example we assumed that your JABAWS server URL is <span class="hightlight">http://localhost:8080</span> and JABAWS context path is <span class="hightlight">jabaws</span>
+  <span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>
+  In this example we assumed that your JABAWS server URL is <span class="hightlight">http://localhost:8080</span> and JABAWS context path is <span class="hightlight">jabaws</span>
 </li>
-
 <li>Alternately, you can point Jalview at your new server:
 <ul>
   <li>Launch the desktop version of <a href="http://www.jalview.org/download.html">Jalview</a></li>
@@ -103,7 +105,7 @@ In this example we assumed that your JABAWS server URL is <span class="hightligh
 <!--  TODO put JABAWS CMD test instructions here -->
 </div> <!-- content end-->
 <!-- about end-->
-<div id="copyright">Last update: 10 August 2011<br/>
+<div id="copyright">Last update: 16 September 2011<br/>
 Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>
 
 </div><!-- wrapper end -->