source.jalview.org Git - jabaws.git/commit

git://source.jalview.org / jabaws.git / commit

author	pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
	Mon, 20 Jun 2011 16:37:41 +0000 (16:37 +0000)
committer	pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
	Mon, 20 Jun 2011 16:37:41 +0000 (16:37 +0000)
commit	b67f9b9dd77fa8f57d515842b8382b88d85cc029
tree	5476eb327fbef6344961f34bc10f349b11429a82	tree \| snapshot
parent	faaf27fc0103b2fbd8a9a19a2aa8e544d2144fbb	commit \| diff

new version of muscle 3.8.31
binaries for various systems, sources, help file and configuration is updated

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4283 e3abac25-378b-4346-85de-24260fe3988d

50 files changed:

TODO.txt		diff \| blob \| history
binaries/linuxAMD64/muscle		diff \| blob \| history
binaries/linuxIA32/muscle		diff \| blob \| history
binaries/src/muscle/Makefile		diff \| blob \| history
binaries/src/muscle/README.txt	[new file with mode: 0644]	blob
binaries/src/muscle/aln.cpp		diff \| blob \| history
binaries/src/muscle/color.cpp		diff \| blob \| history
binaries/src/muscle/domuscle.cpp		diff \| blob \| history
binaries/src/muscle/gatest.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/glbalignla.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/glbalignns.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/globals.cpp		diff \| blob \| history
binaries/src/muscle/globalsosx.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/globalsother.cpp		diff \| blob \| history
binaries/src/muscle/intmath.cpp		diff \| blob \| history
binaries/src/muscle/main.cpp		diff \| blob \| history
binaries/src/muscle/make.err	[new file with mode: 0644]	blob
binaries/src/muscle/make.out	[new file with mode: 0644]	blob
binaries/src/muscle/makerootmsa.cpp		diff \| blob \| history
binaries/src/muscle/mk	[new file with mode: 0644]	blob
binaries/src/muscle/msadistkimura.h	[new file with mode: 0644]	blob
binaries/src/muscle/msadistmafft.h	[new file with mode: 0644]	blob
binaries/src/muscle/muscle	[deleted file]	blob \| history
binaries/src/muscle/muscle.h		diff \| blob \| history
binaries/src/muscle/muscle.vcproj	[new file with mode: 0644]	blob
binaries/src/muscle/muscle21	[new file with mode: 0644]	blob
binaries/src/muscle/muscle21.vcproj	[new file with mode: 0644]	blob
binaries/src/muscle/onexception.cpp		diff \| blob \| history
binaries/src/muscle/params.cpp		diff \| blob \| history
binaries/src/muscle/phy.cpp		diff \| blob \| history
binaries/src/muscle/progress.cpp		diff \| blob \| history
binaries/src/muscle/redblack.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/releases.txt	[new file with mode: 0644]	blob
binaries/src/muscle/scoremx.cpp	[new file with mode: 0644]	blob
binaries/src/muscle/spfast.cpp		diff \| blob \| history
binaries/src/muscle/subfam.cpp		diff \| blob \| history
binaries/src/muscle/svnmods.h	[new file with mode: 0644]	blob
binaries/src/muscle/svnversion.h	[new file with mode: 0644]	blob
binaries/src/muscle/textfile.cpp		diff \| blob \| history
binaries/src/muscle/typetostr.cpp		diff \| blob \| history
binaries/src/muscle/usage.cpp		diff \| blob \| history
binaries/src/muscle/version.txt	[new file with mode: 0644]	blob
binaries/windows/muscle.exe		diff \| blob \| history
conf/settings/MuscleParameters.xml		diff \| blob \| history
conf/settings/MusclePresets.xml		diff \| blob \| history
runner/compbio/runner/msa/Muscle.java		diff \| blob \| history
testsrc/testdata/MuscleLimits.xml		diff \| blob \| history
testsrc/testdata/MuscleParameters.xml		diff \| blob \| history
testsrc/testdata/MusclePresets.xml		diff \| blob \| history
website/prog_docs/muscle.html		diff \| blob \| history

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