jabaws.git
8 years agoFix core WST file master
Sasha [Fri, 14 Jun 2013 14:34:28 +0000 (15:34 +0100)]
Fix core WST file

8 years agoMerge branch 'JABAWS_Release_2_0'
Sasha [Fri, 14 Jun 2013 13:59:36 +0000 (14:59 +0100)]
Merge branch 'JABAWS_Release_2_0'

Conflicts:
.project
.settings/org.eclipse.wst.common.component

8 years agoNew eclipse project file
Sasha [Fri, 14 Jun 2013 12:53:07 +0000 (13:53 +0100)]
New eclipse project file

8 years agoNew project name
Sasha [Fri, 14 Jun 2013 12:46:58 +0000 (13:46 +0100)]
New project name

8 years agonecessary changes for my Eclipse
Sasha [Fri, 14 Jun 2013 12:46:09 +0000 (13:46 +0100)]
necessary changes for my Eclipse

8 years agocorrect tomcat configuration
Sasha [Fri, 14 Jun 2013 12:44:54 +0000 (13:44 +0100)]
correct tomcat configuration

8 years agoAdd necessary changes for Eclipse
Sasha [Fri, 14 Jun 2013 12:39:02 +0000 (13:39 +0100)]
Add necessary changes for Eclipse

8 years agomake changes in log configuration
Sasha [Fri, 14 Jun 2013 12:38:01 +0000 (13:38 +0100)]
make changes in log configuration

8 years agoAdd log4j classes to min-jaba-client-2.0.jar. Now separate log4j-1.2.15.jar is not...
Sasha [Fri, 19 Apr 2013 17:13:23 +0000 (18:13 +0100)]
Add log4j classes to min-jaba-client-2.0.jar. Now separate log4j-1.2.15.jar is not needed

8 years agoAdd jobsout/README
Alexander Sherstnev [Fri, 29 Mar 2013 13:43:10 +0000 (13:43 +0000)]
Add jobsout/README

8 years agoRebuilt jars for jabaws
Alexander Sherstnev [Fri, 29 Mar 2013 12:44:12 +0000 (12:44 +0000)]
Rebuilt jars for jabaws

8 years agodifferent corrections
Alexander Sherstnev [Fri, 29 Mar 2013 12:37:48 +0000 (12:37 +0000)]
different corrections

9 years agoMerge branch 'JWS-27-jronn' into JABAWS_Release_2_0 origin/JABAWS_Release_2_0
jprocter [Mon, 4 Jun 2012 16:08:56 +0000 (17:08 +0100)]
Merge branch 'JWS-27-jronn' into JABAWS_Release_2_0

9 years agoJWS-27 replaced JRonn with patched biojava 3.0.4 version which runs correctly for...
jprocter [Mon, 4 Jun 2012 16:06:13 +0000 (17:06 +0100)]
JWS-27 replaced JRonn with patched biojava 3.0.4 version which runs correctly for large sets of sequences in multithreaded mode

9 years agoMerge branch 'JWS-29' into JABAWS_Release_2_0
jprocter [Fri, 1 Jun 2012 11:56:14 +0000 (12:56 +0100)]
Merge branch 'JWS-29' into JABAWS_Release_2_0

9 years agoJWS-29 patch fixes bug - wierd workaround since "^\\s*>" caused scanner to advance...
jprocter [Fri, 1 Jun 2012 11:53:39 +0000 (12:53 +0100)]
JWS-29 patch fixes bug - wierd workaround since "^\\s*>" caused scanner to advance to end of file rather than start of next FASTA header

9 years agotest demonstrating JWS-29 assertion failure
jprocter [Fri, 1 Jun 2012 10:17:01 +0000 (11:17 +0100)]
test demonstrating JWS-29 assertion failure

9 years agoMerge branch 'JWS-36' into JABAWS_Release_2_0
jprocter [Fri, 1 Jun 2012 10:08:28 +0000 (11:08 +0100)]
Merge branch 'JWS-36' into JABAWS_Release_2_0

9 years agoJWS-36 patched Scores writer to put spaces between ranges and space separated scores
jprocter [Fri, 1 Jun 2012 09:57:51 +0000 (10:57 +0100)]
JWS-36 patched Scores writer to put spaces between ranges and space separated scores

9 years agoMerge branch 'JWS-35' into JABAWS_Release_2_0
jprocter [Thu, 31 May 2012 17:31:28 +0000 (18:31 +0100)]
Merge branch 'JWS-35' into JABAWS_Release_2_0

9 years agopatch fixes JWS-35
jprocter [Thu, 31 May 2012 17:27:18 +0000 (18:27 +0100)]
patch fixes JWS-35

9 years agotest for JWS-35 - check that range and first value of prediction for each method...
jprocter [Thu, 31 May 2012 17:27:02 +0000 (18:27 +0100)]
test for JWS-35 - check that range and first value of prediction for each method matches expected values

9 years agoremove jabaws 3 development code
jprocter [Tue, 15 May 2012 15:55:08 +0000 (16:55 +0100)]
remove jabaws 3 development code

9 years agoensure we never check in autogenerated documentation or build artefacts
jprocter [Tue, 15 May 2012 15:54:20 +0000 (16:54 +0100)]
ensure we never check in autogenerated documentation or build artefacts

9 years agofix jabaws download link
jprocter [Tue, 15 May 2012 15:53:15 +0000 (16:53 +0100)]
fix jabaws download link

9 years agoword order
pvtroshin [Mon, 12 Dec 2011 16:19:50 +0000 (16:19 +0000)]
word order

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4814 e3abac25-378b-4346-85de-24260fe3988d

9 years agoload the driver explicitly
pvtroshin [Mon, 12 Dec 2011 14:46:33 +0000 (14:46 +0000)]
load the driver explicitly

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4813 e3abac25-378b-4346-85de-24260fe3988d

9 years agoAMI ID update
pvtroshin [Fri, 9 Dec 2011 17:23:23 +0000 (17:23 +0000)]
AMI ID update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4809 e3abac25-378b-4346-85de-24260fe3988d

9 years agoweb site minor tweaks
pvtroshin [Fri, 9 Dec 2011 15:07:50 +0000 (15:07 +0000)]
web site minor tweaks

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4808 e3abac25-378b-4346-85de-24260fe3988d

9 years agoweb pages url updates
pvtroshin [Fri, 9 Dec 2011 13:20:54 +0000 (13:20 +0000)]
web pages url updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4805 e3abac25-378b-4346-85de-24260fe3988d

9 years agoBug fix to the stat pages
pvtroshin [Thu, 8 Dec 2011 17:44:10 +0000 (17:44 +0000)]
Bug fix to the stat pages

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4802 e3abac25-378b-4346-85de-24260fe3988d

9 years agoupdated javadoc for the system as well as new redirect address for download app
pvtroshin [Wed, 7 Dec 2011 14:06:53 +0000 (14:06 +0000)]
updated javadoc for the system as well as new redirect address for download app

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4793 e3abac25-378b-4346-85de-24260fe3988d

9 years agoremove old project javadoc
pvtroshin [Wed, 7 Dec 2011 12:29:20 +0000 (12:29 +0000)]
remove old project javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4790 e3abac25-378b-4346-85de-24260fe3988d

9 years agoremove old datamodel javadoc
pvtroshin [Wed, 7 Dec 2011 12:04:26 +0000 (12:04 +0000)]
remove old datamodel javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4789 e3abac25-378b-4346-85de-24260fe3988d

9 years agoweb pages updates to point to new download location also the redirect servlet
pvtroshin [Wed, 7 Dec 2011 11:54:34 +0000 (11:54 +0000)]
web pages updates to point to new download location also the redirect servlet

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4788 e3abac25-378b-4346-85de-24260fe3988d

9 years agoFix for potential NullPointer exception if the results are an empty file
pvtroshin [Tue, 8 Nov 2011 16:19:29 +0000 (16:19 +0000)]
Fix for potential NullPointer exception if the results are an empty file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4721 e3abac25-378b-4346-85de-24260fe3988d

9 years agoremove a copy of category tester
pvtroshin [Thu, 3 Nov 2011 10:15:05 +0000 (10:15 +0000)]
remove a copy of category tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4708 e3abac25-378b-4346-85de-24260fe3988d

9 years agotest that methods and fields of Category are publicly accessible
jprocter [Wed, 2 Nov 2011 17:34:40 +0000 (17:34 +0000)]
test that methods and fields of Category are publicly accessible

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4707 e3abac25-378b-4346-85de-24260fe3988d

9 years agoA few minor changes to the test
pvtroshin [Wed, 2 Nov 2011 11:56:11 +0000 (11:56 +0000)]
A few minor changes to the test

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4706 e3abac25-378b-4346-85de-24260fe3988d

9 years agoupdate binaries
pvtroshin [Wed, 2 Nov 2011 11:44:36 +0000 (11:44 +0000)]
update binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4705 e3abac25-378b-4346-85de-24260fe3988d

9 years agoAssign a test to an appropriate test category
pvtroshin [Wed, 2 Nov 2011 11:41:50 +0000 (11:41 +0000)]
Assign a test to an appropriate test category

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4704 e3abac25-378b-4346-85de-24260fe3988d

9 years agoFix bug in category class and use Jim's test as a test case
pvtroshin [Wed, 2 Nov 2011 11:39:06 +0000 (11:39 +0000)]
Fix bug in category class and use Jim's test as a test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4703 e3abac25-378b-4346-85de-24260fe3988d

9 years agoupdate build artefacts
pvtroshin [Mon, 31 Oct 2011 17:48:42 +0000 (17:48 +0000)]
update build artefacts

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4701 e3abac25-378b-4346-85de-24260fe3988d

9 years agoMove Category into data.msa package from ws.server to get it into min jabaws package.
pvtroshin [Mon, 31 Oct 2011 17:47:35 +0000 (17:47 +0000)]
Move Category into data.msa package from ws.server to get it into min jabaws package.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4700 e3abac25-378b-4346-85de-24260fe3988d

10 years agoJABAWS web site update - new logo and title page
pvtroshin [Thu, 13 Oct 2011 14:47:09 +0000 (14:47 +0000)]
JABAWS web site update - new logo and title page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4655 e3abac25-378b-4346-85de-24260fe3988d

10 years agochange tracker code to compbio
pvtroshin [Tue, 11 Oct 2011 11:44:28 +0000 (11:44 +0000)]
change tracker code to compbio

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4652 e3abac25-378b-4346-85de-24260fe3988d

10 years agoGoogle Analytics statistics is added
pvtroshin [Tue, 11 Oct 2011 11:37:05 +0000 (11:37 +0000)]
Google Analytics statistics is added

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4651 e3abac25-378b-4346-85de-24260fe3988d

10 years agoga config file
pvtroshin [Tue, 11 Oct 2011 11:15:22 +0000 (11:15 +0000)]
ga config file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4650 e3abac25-378b-4346-85de-24260fe3988d

10 years agoChanging of input type
pvtroshin [Mon, 10 Oct 2011 17:13:34 +0000 (17:13 +0000)]
Changing of input type

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4648 e3abac25-378b-4346-85de-24260fe3988d

10 years agoWeb site updates
pvtroshin [Wed, 5 Oct 2011 10:52:23 +0000 (10:52 +0000)]
Web site updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4643 e3abac25-378b-4346-85de-24260fe3988d

10 years agoRemove test jobs from statistics
pvtroshin [Wed, 5 Oct 2011 10:51:38 +0000 (10:51 +0000)]
Remove test jobs from statistics

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4642 e3abac25-378b-4346-85de-24260fe3988d

10 years agoService status pages update
pvtroshin [Fri, 16 Sep 2011 15:17:24 +0000 (15:17 +0000)]
Service status pages update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4592 e3abac25-378b-4346-85de-24260fe3988d

10 years agoweb site update new pages for awss beanstalk deployment
pvtroshin [Fri, 16 Sep 2011 14:39:42 +0000 (14:39 +0000)]
web site update new pages for awss beanstalk deployment

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4591 e3abac25-378b-4346-85de-24260fe3988d

10 years agoallow head method for all jabaws servlets
pvtroshin [Fri, 16 Sep 2011 14:38:53 +0000 (14:38 +0000)]
allow head method for all jabaws servlets

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4590 e3abac25-378b-4346-85de-24260fe3988d

10 years agoadd response to head method
pvtroshin [Fri, 16 Sep 2011 14:38:31 +0000 (14:38 +0000)]
add response to head method

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4589 e3abac25-378b-4346-85de-24260fe3988d

10 years agocomment out services checkers from the security constrain
pvtroshin [Tue, 6 Sep 2011 17:15:55 +0000 (17:15 +0000)]
comment out services checkers from the security constrain

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4574 e3abac25-378b-4346-85de-24260fe3988d

10 years agodoc update
pvtroshin [Tue, 6 Sep 2011 17:15:22 +0000 (17:15 +0000)]
doc update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4573 e3abac25-378b-4346-85de-24260fe3988d

10 years agoWeb services status checking servlets, new clustalo x32 binary from Fabian, other...
pvtroshin [Tue, 6 Sep 2011 16:12:47 +0000 (16:12 +0000)]
Web services status checking servlets, new clustalo x32 binary from Fabian, other small changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4571 e3abac25-378b-4346-85de-24260fe3988d

10 years agoHead title change
pvtroshin [Tue, 6 Sep 2011 12:05:44 +0000 (12:05 +0000)]
Head title change

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4568 e3abac25-378b-4346-85de-24260fe3988d

10 years agoUpdate for web services stubs
pvtroshin [Mon, 5 Sep 2011 15:20:11 +0000 (15:20 +0000)]
Update for web services stubs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4566 e3abac25-378b-4346-85de-24260fe3988d

10 years agoBinaries for Mac in a war file
pvtroshin [Mon, 5 Sep 2011 15:12:40 +0000 (15:12 +0000)]
Binaries for Mac in a war file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4565 e3abac25-378b-4346-85de-24260fe3988d

10 years agoupdates to web site
pvtroshin [Mon, 5 Sep 2011 15:11:55 +0000 (15:11 +0000)]
updates to web site

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4564 e3abac25-378b-4346-85de-24260fe3988d

10 years agoAdding listener for setting executable flag on the web application start up
pvtroshin [Mon, 5 Sep 2011 15:11:23 +0000 (15:11 +0000)]
Adding listener for setting executable flag on the web application start up

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4563 e3abac25-378b-4346-85de-24260fe3988d

10 years agoAdd an implementation for Services.getServiceInfo method and categorization for services.
pvtroshin [Mon, 5 Sep 2011 15:09:58 +0000 (15:09 +0000)]
Add an implementation for Services.getServiceInfo method and categorization for services.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4562 e3abac25-378b-4346-85de-24260fe3988d

10 years agoweb pages updates
pvtroshin [Fri, 2 Sep 2011 17:22:37 +0000 (17:22 +0000)]
web pages updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4559 e3abac25-378b-4346-85de-24260fe3988d

10 years agoAn attempt to automatically make binaries executables - not successful but the code...
pvtroshin [Thu, 25 Aug 2011 15:46:49 +0000 (15:46 +0000)]
An attempt to automatically make binaries executables - not successful but the code is commented out and let in for future use

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4548 e3abac25-378b-4346-85de-24260fe3988d

10 years agoMinor changes
pvtroshin [Tue, 16 Aug 2011 13:22:10 +0000 (13:22 +0000)]
Minor changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4526 e3abac25-378b-4346-85de-24260fe3988d

10 years agominor change
pvtroshin [Tue, 16 Aug 2011 11:38:54 +0000 (11:38 +0000)]
minor change

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4525 e3abac25-378b-4346-85de-24260fe3988d

10 years agoadding one more window web service into the test case
pvtroshin [Tue, 16 Aug 2011 11:38:38 +0000 (11:38 +0000)]
adding one more window web service into the test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4524 e3abac25-378b-4346-85de-24260fe3988d

10 years agorearrangement for mac binaries to link up with a web page
pvtroshin [Fri, 12 Aug 2011 13:37:46 +0000 (13:37 +0000)]
rearrangement for mac binaries to link up with a web page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4509 e3abac25-378b-4346-85de-24260fe3988d

10 years agoJavadoc fixes
pvtroshin [Fri, 12 Aug 2011 13:35:18 +0000 (13:35 +0000)]
Javadoc fixes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4508 e3abac25-378b-4346-85de-24260fe3988d

10 years agoadding clustalO documentation
pvtroshin [Fri, 12 Aug 2011 13:34:38 +0000 (13:34 +0000)]
adding clustalO documentation

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4507 e3abac25-378b-4346-85de-24260fe3988d

10 years agoupdated javadoc
pvtroshin [Fri, 12 Aug 2011 13:34:07 +0000 (13:34 +0000)]
updated javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4506 e3abac25-378b-4346-85de-24260fe3988d

10 years agoremove dm javadoc to update
pvtroshin [Fri, 12 Aug 2011 13:29:30 +0000 (13:29 +0000)]
remove dm javadoc to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4505 e3abac25-378b-4346-85de-24260fe3988d

10 years agodelete old javadoc to update
pvtroshin [Fri, 12 Aug 2011 13:02:22 +0000 (13:02 +0000)]
delete old javadoc to update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4504 e3abac25-378b-4346-85de-24260fe3988d

10 years agobuild client source when build all
pvtroshin [Fri, 12 Aug 2011 12:39:57 +0000 (12:39 +0000)]
build client source when build all

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4503 e3abac25-378b-4346-85de-24260fe3988d

10 years agoMac binaries
pvtroshin [Fri, 12 Aug 2011 12:38:29 +0000 (12:38 +0000)]
Mac binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4502 e3abac25-378b-4346-85de-24260fe3988d

10 years agowebsite docs update
pvtroshin [Fri, 12 Aug 2011 12:36:42 +0000 (12:36 +0000)]
website docs update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4501 e3abac25-378b-4346-85de-24260fe3988d

10 years agoServices class refactored to get rid of engines and runners dependencies.
pvtroshin [Fri, 12 Aug 2011 12:32:00 +0000 (12:32 +0000)]
Services class refactored to get rid of engines and runners dependencies.
Build script has new task to pack client sources

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4500 e3abac25-378b-4346-85de-24260fe3988d

10 years agoChange header template for a new version
pvtroshin [Thu, 11 Aug 2011 15:00:41 +0000 (15:00 +0000)]
Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4495 e3abac25-378b-4346-85de-24260fe3988d

10 years agoChange header template for a new version
pvtroshin [Thu, 11 Aug 2011 15:00:30 +0000 (15:00 +0000)]
Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4494 e3abac25-378b-4346-85de-24260fe3988d

10 years agoChange header template for a new version
pvtroshin [Thu, 11 Aug 2011 15:00:12 +0000 (15:00 +0000)]
Change header template for a new version

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4493 e3abac25-378b-4346-85de-24260fe3988d

10 years agoAdding new web service, getting rid of virtual box in docs
pvtroshin [Thu, 11 Aug 2011 12:56:46 +0000 (12:56 +0000)]
Adding new web service, getting rid of virtual box in docs

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4491 e3abac25-378b-4346-85de-24260fe3988d

10 years agoclustalo x64 from the developer
pvtroshin [Thu, 11 Aug 2011 12:00:20 +0000 (12:00 +0000)]
clustalo x64 from the developer

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4490 e3abac25-378b-4346-85de-24260fe3988d

10 years agox86 and x64 clustalo binaries
pvtroshin [Thu, 11 Aug 2011 11:57:24 +0000 (11:57 +0000)]
x86 and x64 clustalo binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4489 e3abac25-378b-4346-85de-24260fe3988d

10 years agox86 clustalo binary
pvtroshin [Thu, 11 Aug 2011 11:56:53 +0000 (11:56 +0000)]
x86 clustalo binary

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4488 e3abac25-378b-4346-85de-24260fe3988d

10 years agoFixes to testcase, take into account the new WS
pvtroshin [Thu, 11 Aug 2011 10:45:09 +0000 (10:45 +0000)]
Fixes to testcase, take into account the new WS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4487 e3abac25-378b-4346-85de-24260fe3988d

10 years agoDrop support for VirtualBox
pvtroshin [Wed, 10 Aug 2011 16:07:37 +0000 (16:07 +0000)]
Drop support for VirtualBox

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4484 e3abac25-378b-4346-85de-24260fe3988d

10 years agodundee executable conf
pvtroshin [Thu, 4 Aug 2011 14:44:32 +0000 (14:44 +0000)]
dundee executable conf

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4476 e3abac25-378b-4346-85de-24260fe3988d

10 years agoGet rid of v_hmem settings
pvtroshin [Thu, 4 Aug 2011 14:38:34 +0000 (14:38 +0000)]
Get rid of v_hmem settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4475 e3abac25-378b-4346-85de-24260fe3988d

10 years agoGet rid of v_hmem settings
pvtroshin [Thu, 4 Aug 2011 14:38:26 +0000 (14:38 +0000)]
Get rid of v_hmem settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4474 e3abac25-378b-4346-85de-24260fe3988d

10 years agoComments
pvtroshin [Thu, 4 Aug 2011 14:32:46 +0000 (14:32 +0000)]
Comments

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4473 e3abac25-378b-4346-85de-24260fe3988d

10 years agoupdate
pvtroshin [Thu, 4 Aug 2011 13:22:09 +0000 (13:22 +0000)]
update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4470 e3abac25-378b-4346-85de-24260fe3988d

10 years agoClustalO servlets
pvtroshin [Thu, 4 Aug 2011 13:21:54 +0000 (13:21 +0000)]
ClustalO servlets

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4469 e3abac25-378b-4346-85de-24260fe3988d

10 years agoreverting cluster engine settings (disabled by default)
pvtroshin [Thu, 4 Aug 2011 13:21:26 +0000 (13:21 +0000)]
reverting cluster engine settings (disabled by default)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4468 e3abac25-378b-4346-85de-24260fe3988d

10 years agoClustalO settings
pvtroshin [Thu, 4 Aug 2011 13:19:45 +0000 (13:19 +0000)]
ClustalO settings

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4467 e3abac25-378b-4346-85de-24260fe3988d

10 years agoClustalO compile
pvtroshin [Thu, 4 Aug 2011 13:19:25 +0000 (13:19 +0000)]
ClustalO compile

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4466 e3abac25-378b-4346-85de-24260fe3988d

10 years agoclustalo 64x binary
pvtroshin [Thu, 4 Aug 2011 13:18:35 +0000 (13:18 +0000)]
clustalo 64x binary

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4465 e3abac25-378b-4346-85de-24260fe3988d

10 years agoClustal Omega web service wrapper and tester
pvtroshin [Thu, 4 Aug 2011 13:17:10 +0000 (13:17 +0000)]
Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4464 e3abac25-378b-4346-85de-24260fe3988d

10 years agoClustal Omega web service wrapper and tester
pvtroshin [Thu, 4 Aug 2011 13:16:38 +0000 (13:16 +0000)]
Clustal Omega web service wrapper and tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4463 e3abac25-378b-4346-85de-24260fe3988d