pvtroshin [Thu, 4 Aug 2011 13:16:16 +0000 (13:16 +0000)]
Clustal Omega web service wrapper and tester
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4462
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 3 Aug 2011 17:06:32 +0000 (17:06 +0000)]
Wrapper for Clustal Omega.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4458
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 2 Aug 2011 16:50:27 +0000 (16:50 +0000)]
Updates to a web site
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4441
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 2 Aug 2011 16:49:23 +0000 (16:49 +0000)]
fix for a broken link to a static page
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4440
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:31:19 +0000 (11:31 +0000)]
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4412
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:31:08 +0000 (11:31 +0000)]
new web site design and updates to the web pages
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4411
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 13 Jul 2011 11:30:06 +0000 (11:30 +0000)]
new images for jabaws 2 web site, getting rid of old images
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4410
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:18:53 +0000 (12:18 +0000)]
formatting change
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4396
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:15:05 +0000 (12:15 +0000)]
ia32 iupred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4395
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:14:49 +0000 (12:14 +0000)]
ia32 iupred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4394
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 12:13:54 +0000 (12:13 +0000)]
Pre release Executable.properties, help added, unused properties commented out
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4393
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 6 Jul 2011 10:56:04 +0000 (10:56 +0000)]
Better method for searching JAVA
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4392
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 10:59:53 +0000 (10:59 +0000)]
Add servlet for public usage stats display.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4384
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 09:42:12 +0000 (09:42 +0000)]
Limits are optional so correct tests
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4379
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 1 Jul 2011 09:41:27 +0000 (09:41 +0000)]
remove assert
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4378
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 30 Jun 2011 17:22:57 +0000 (17:22 +0000)]
obtain JAVA executable path from the JAVA_HOME variable. Does not require path to java for jar libraries.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4376
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 28 Jun 2011 16:54:59 +0000 (16:54 +0000)]
Stat collector updates to work with JABA 2 input & output files
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4366
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 28 Jun 2011 15:30:02 +0000 (15:30 +0000)]
Clean database & small changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4363
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 17:11:09 +0000 (17:11 +0000)]
Expose a few methods of Client and WSTester as API for Jim, new distributables.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4343
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 16:40:37 +0000 (16:40 +0000)]
Slight refactoring
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4342
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 15:33:31 +0000 (15:33 +0000)]
Minor tweaks
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4340
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 14:55:27 +0000 (14:55 +0000)]
Dundee compiled x86 binaries a few fixes for compile script
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4338
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:48:11 +0000 (13:48 +0000)]
Build script improvements & updated util
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4337
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:42:45 +0000 (13:42 +0000)]
Generalizing configuration prior to release.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4336
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 27 Jun 2011 13:29:22 +0000 (13:29 +0000)]
remove settings as separate settings no longer required
Add separate conf setting for engines and executables for dundee
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4334
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 24 Jun 2011 23:32:23 +0000 (23:32 +0000)]
Get rid of unused code
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4329
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 24 Jun 2011 17:17:29 +0000 (17:17 +0000)]
Further simplification of build tasks
get rid of biojava jar as it's not in use
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4328
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:15:51 +0000 (14:15 +0000)]
update to compbio.utils and a few small changes
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4327
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:11:27 +0000 (14:11 +0000)]
build script updated
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4326
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:10:48 +0000 (14:10 +0000)]
links update (not checked though)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4325
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:10:02 +0000 (14:10 +0000)]
compbio projects sources
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4324
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:08:55 +0000 (14:08 +0000)]
pack binaries from folders into archives for easy download
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4323
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:04:51 +0000 (14:04 +0000)]
relocated to website/archive folder
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4322
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:04:22 +0000 (14:04 +0000)]
relocate pre-compiled executables from binaries folder
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4321
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 14:02:01 +0000 (14:02 +0000)]
remove old executables
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4320
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 12:09:51 +0000 (12:09 +0000)]
rename
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4317
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 10:56:00 +0000 (10:56 +0000)]
regenerated stubs & TODO
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:47:41 +0000 (09:47 +0000)]
Adding latest test results
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4313
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:46:17 +0000 (09:46 +0000)]
Remove old test from web site to replace with most recent
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4312
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:34:27 +0000 (09:34 +0000)]
Disable failed tests
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4311
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:16:47 +0000 (09:16 +0000)]
modification to enable globplot run on nanna (PYTHONPATH variable)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4310
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 23 Jun 2011 09:15:05 +0000 (09:15 +0000)]
Fixes to test cases
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4309
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 22 Jun 2011 17:26:22 +0000 (17:26 +0000)]
annotate test with appropriate groups
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4308
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Wed, 22 Jun 2011 17:11:48 +0000 (17:11 +0000)]
Fix for testcases
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4307
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 17:17:08 +0000 (17:17 +0000)]
Fixes for failed test cases (most was due to the data being used or problems with test cases themselves)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4303
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 15:44:23 +0000 (15:44 +0000)]
custom test suit xml
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4302
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:48:37 +0000 (14:48 +0000)]
tcoffee updated docs & todo
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4301
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:47:39 +0000 (14:47 +0000)]
IA32 and x64 tcoffee binaries are added
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4300
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:34:00 +0000 (14:34 +0000)]
getting rid of ambiguous documentation folder. all prog_doc are now stored in website/prog_docs
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4299
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:25:36 +0000 (14:25 +0000)]
new version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for dundee cluster)
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4298
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 14:14:44 +0000 (14:14 +0000)]
removing tcoffee to update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4297
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 12:29:25 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4296
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 12:29:09 +0000 (12:29 +0000)]
Revert multithreading support for mafft as it does not seem to work
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4295
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 12:06:02 +0000 (12:06 +0000)]
Get rind of NativeClusterJob interface as pretty much every jobs best to use some cluster settings, and they are simply defined in the executable conf file and passed by the SkeletalExecutable.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4294
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 11:35:08 +0000 (11:35 +0000)]
mafft new location
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4293
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 11:34:53 +0000 (11:34 +0000)]
Changes to accomodate new version's of mafft packaging
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4292
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 11:33:39 +0000 (11:33 +0000)]
add IA32 linux muscle binary
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4291
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 11:10:02 +0000 (11:10 +0000)]
IA32 mafft executables
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4290
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 10:58:50 +0000 (10:58 +0000)]
New Mafft binaries for 32 bit linux system
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4289
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 10:57:18 +0000 (10:57 +0000)]
New Mafft binaries for 64 bit linux system
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4288
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 10:27:17 +0000 (10:27 +0000)]
remove mafft extensions - we do not support them
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4287
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 10:02:51 +0000 (10:02 +0000)]
new mafft v 6.857 with extensions
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4286
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Tue, 21 Jun 2011 10:01:52 +0000 (10:01 +0000)]
Removing old version of mafft to replace with the new
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4285
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 20 Jun 2011 16:43:34 +0000 (16:43 +0000)]
todo update
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4284
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Mon, 20 Jun 2011 16:37:41 +0000 (16:37 +0000)]
new version of muscle 3.8.31
binaries for various systems, sources, help file and configuration is updated
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4283
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 17 Jun 2011 16:17:57 +0000 (16:17 +0000)]
todos
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4282
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 17 Jun 2011 15:45:17 +0000 (15:45 +0000)]
Web services refactoring & bug fixing
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4281
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Fri, 17 Jun 2011 14:06:30 +0000 (14:06 +0000)]
Refactoring of all SequenceAnnotation web services
New version of Metro
Definition for IUPred exec
Stubs regenerated
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4280
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 16:48:52 +0000 (16:48 +0000)]
todos
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4279
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 16:46:41 +0000 (16:46 +0000)]
Binaries relocation
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4278
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 16:18:33 +0000 (16:18 +0000)]
IUPred for windows
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4277
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 14:40:43 +0000 (14:40 +0000)]
Integrating IUPredWS
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4276
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 14:30:04 +0000 (14:30 +0000)]
A few more tests for IUPred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4275
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 14:22:06 +0000 (14:22 +0000)]
IUPred final touches. All test cases pass
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4274
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 13:35:08 +0000 (13:35 +0000)]
Improvements to the code
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4273
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 13:13:19 +0000 (13:13 +0000)]
IUpred integration
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4272
e3abac25-378b-4346-85de-
24260fe3988d
pvtroshin [Thu, 16 Jun 2011 13:10:17 +0000 (13:10 +0000)]
Modified IUPred to read multiple fasta as input
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4271
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pvtroshin [Tue, 14 Jun 2011 17:26:54 +0000 (17:26 +0000)]
Adding XML executable description for IUPred
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4266
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 14 Jun 2011 17:12:12 +0000 (17:12 +0000)]
IUPred wrapper, tester and new binary for X64 linux systems
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4265
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pvtroshin [Tue, 14 Jun 2011 15:39:19 +0000 (15:39 +0000)]
IUPred result readers. IUpred binaries compilation scripts. IUpred executable description. IUPred output files for testing
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4263
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 13 Jun 2011 15:50:35 +0000 (15:50 +0000)]
Adding IUPred executables for the new web service
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4262
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 13 Jun 2011 15:01:09 +0000 (15:01 +0000)]
Command line options are described and added to the client. Registry is modified to perform test after 24 hours from last test
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4261
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pvtroshin [Wed, 8 Jun 2011 17:42:15 +0000 (17:42 +0000)]
JWS2 client
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4238
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 8 Jun 2011 17:36:31 +0000 (17:36 +0000)]
JWS2 client
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4237
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 8 Jun 2011 16:03:25 +0000 (16:03 +0000)]
More work to disorder prediction client & services.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4236
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 8 Jun 2011 12:49:27 +0000 (12:49 +0000)]
Web service stubs are regenerated to incorporate new the methods. Excveption handling improved for tester
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4231
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 8 Jun 2011 10:09:43 +0000 (10:09 +0000)]
WStester & registry are completed
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4230
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 7 Jun 2011 16:47:05 +0000 (16:47 +0000)]
further work on registry & WSTester nearly there
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4229
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 6 Jun 2011 18:16:36 +0000 (18:16 +0000)]
Adding registry web service and changes to WStester and JWS2Client code. Bugs in input/ouput setup for a few web services fixed
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4223
e3abac25-378b-4346-85de-
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pvtroshin [Fri, 3 Jun 2011 12:59:24 +0000 (12:59 +0000)]
exclude cancelled jobs from incomplete
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4214
e3abac25-378b-4346-85de-
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pvtroshin [Wed, 1 Jun 2011 13:19:37 +0000 (13:19 +0000)]
Changes to return type of Executable.getType() method to make it compile with Oracle javac.
A few modifications to statistics package.
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4201
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pvtroshin [Tue, 31 May 2011 16:54:27 +0000 (16:54 +0000)]
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4200
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 31 May 2011 16:53:34 +0000 (16:53 +0000)]
A bug fix, help text for stat jsp pages and style improvements
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4199
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pvtroshin [Tue, 31 May 2011 14:26:36 +0000 (14:26 +0000)]
Latest web site update from JABA_r1 r. 4152
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4196
e3abac25-378b-4346-85de-
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pvtroshin [Tue, 31 May 2011 12:27:37 +0000 (12:27 +0000)]
Stat collection and display done
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4195
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 30 May 2011 17:23:42 +0000 (17:23 +0000)]
TODO
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4194
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 30 May 2011 17:17:34 +0000 (17:17 +0000)]
Further work to enable stat collection and display
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4193
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 30 May 2011 17:16:32 +0000 (17:16 +0000)]
New properties to work with work directories
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4192
e3abac25-378b-4346-85de-
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pvtroshin [Mon, 30 May 2011 12:15:28 +0000 (12:15 +0000)]
Further work on statistics display
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4190
e3abac25-378b-4346-85de-
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pvtroshin [Fri, 27 May 2011 18:11:30 +0000 (18:11 +0000)]
new properties for stat collector conf
git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4185
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git://source.jalview.org / jabaws.git / log