From 96ab3a201572c3ed7f9a27682bd0b6ca7edb34c7 Mon Sep 17 00:00:00 2001 From: pvtroshin Date: Thu, 11 Aug 2011 15:00:12 +0000 Subject: [PATCH] Change header template for a new version git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4493 e3abac25-378b-4346-85de-24260fe3988d --- .../compbio/data/sequence/ConservationMethod.java | 25 ++++++++--------- .../compbio/data/sequence/DisorderMethod.java | 17 ++++++++++++ datamodel/compbio/data/sequence/FastaSequence.java | 28 +++++++++++--------- datamodel/compbio/data/sequence/Program.java | 4 +-- datamodel/compbio/data/sequence/Range.java | 17 ++++++++++++ .../compbio/data/sequence/SMERFSConstraints.java | 17 ++++++++++++ datamodel/compbio/data/sequence/Score.java | 17 ++++++++++++ datamodel/compbio/data/sequence/ScoreManager.java | 17 ++++++++++++ datamodel/compbio/data/sequence/SequenceUtil.java | 28 +++++++++++--------- 9 files changed, 132 insertions(+), 38 deletions(-) diff --git a/datamodel/compbio/data/sequence/ConservationMethod.java b/datamodel/compbio/data/sequence/ConservationMethod.java index 92130f1..3ee95f1 100644 --- a/datamodel/compbio/data/sequence/ConservationMethod.java +++ b/datamodel/compbio/data/sequence/ConservationMethod.java @@ -1,18 +1,19 @@ -/* - * Copyright (c) 2010 Agnieszka Golicz & Peter Troshin +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 * - * Amino Acid Conservation @version: 1.0 + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation * - * This library is free software; you can redistribute it and/or - * modify it under the terms of the Apache License version 2 as published by the - * Apache Software Foundation This library is distributed in the hope that it - * will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty - * of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache - * License for more details. A copy of the license is in apache_license.txt. It - * is also available here: http://www.apache.org/licenses/LICENSE-2.0.txt - * Any republication or derived work distributed in source code form must - * include this copyright and license notice. + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. */ package compbio.data.sequence; diff --git a/datamodel/compbio/data/sequence/DisorderMethod.java b/datamodel/compbio/data/sequence/DisorderMethod.java index 521d9a3..8c7dd37 100644 --- a/datamodel/compbio/data/sequence/DisorderMethod.java +++ b/datamodel/compbio/data/sequence/DisorderMethod.java @@ -1,3 +1,20 @@ +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. + */ package compbio.data.sequence; public enum DisorderMethod { diff --git a/datamodel/compbio/data/sequence/FastaSequence.java b/datamodel/compbio/data/sequence/FastaSequence.java index a5c92c1..c45e9f5 100644 --- a/datamodel/compbio/data/sequence/FastaSequence.java +++ b/datamodel/compbio/data/sequence/FastaSequence.java @@ -1,15 +1,19 @@ -/* - * Copyright (c) 2009 Peter Troshin JAva Bioinformatics Analysis Web Services - * (JABAWS) @version: 1.0 This library is free software; you can redistribute it - * and/or modify it under the terms of the Apache License version 2 as published - * by the Apache Software Foundation This library is distributed in the hope - * that it will be useful, but WITHOUT ANY WARRANTY; without even the implied - * warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * Apache License for more details. A copy of the license is in - * apache_license.txt. It is also available here: - * @see: http://www.apache.org/licenses/LICENSE-2.0.txt Any republication or - * derived work distributed in source code form must include this copyright and - * license notice. +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. */ package compbio.data.sequence; diff --git a/datamodel/compbio/data/sequence/Program.java b/datamodel/compbio/data/sequence/Program.java index 0e54c76..2ae3c3a 100644 --- a/datamodel/compbio/data/sequence/Program.java +++ b/datamodel/compbio/data/sequence/Program.java @@ -1,6 +1,6 @@ -/* Copyright (c) 2009 Peter Troshin +/* Copyright (c) 2011 Peter Troshin * - * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0 + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 * * This library is free software; you can redistribute it and/or modify it under the terms of the * Apache License version 2 as published by the Apache Software Foundation diff --git a/datamodel/compbio/data/sequence/Range.java b/datamodel/compbio/data/sequence/Range.java index a22ab8c..c2ccc43 100644 --- a/datamodel/compbio/data/sequence/Range.java +++ b/datamodel/compbio/data/sequence/Range.java @@ -1,3 +1,20 @@ +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. + */ package compbio.data.sequence; public class Range implements Comparable { diff --git a/datamodel/compbio/data/sequence/SMERFSConstraints.java b/datamodel/compbio/data/sequence/SMERFSConstraints.java index ca8496e..eda2857 100644 --- a/datamodel/compbio/data/sequence/SMERFSConstraints.java +++ b/datamodel/compbio/data/sequence/SMERFSConstraints.java @@ -1,3 +1,20 @@ +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. + */ package compbio.data.sequence; /** diff --git a/datamodel/compbio/data/sequence/Score.java b/datamodel/compbio/data/sequence/Score.java index 804ef8c..c8cbfb4 100644 --- a/datamodel/compbio/data/sequence/Score.java +++ b/datamodel/compbio/data/sequence/Score.java @@ -1,3 +1,20 @@ +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. + */ package compbio.data.sequence; import java.io.IOException; diff --git a/datamodel/compbio/data/sequence/ScoreManager.java b/datamodel/compbio/data/sequence/ScoreManager.java index 37e041c..cabf507 100644 --- a/datamodel/compbio/data/sequence/ScoreManager.java +++ b/datamodel/compbio/data/sequence/ScoreManager.java @@ -1,3 +1,20 @@ +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. + */ package compbio.data.sequence; import java.io.IOException; diff --git a/datamodel/compbio/data/sequence/SequenceUtil.java b/datamodel/compbio/data/sequence/SequenceUtil.java index d65494e..16b65f2 100644 --- a/datamodel/compbio/data/sequence/SequenceUtil.java +++ b/datamodel/compbio/data/sequence/SequenceUtil.java @@ -1,15 +1,19 @@ -/* - * @(#)SequenceUtil.java 1.0 September 2009 Copyright (c) 2009 Peter Troshin - * Jalview Web Services version: 2.0 This library is free software; you can - * redistribute it and/or modify it under the terms of the Apache License - * version 2 as published by the Apache Software Foundation This library is - * distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; - * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A - * PARTICULAR PURPOSE. See the Apache License for more details. A copy of the - * license is in apache_license.txt. It is also available here: see: - * http://www.apache.org/licenses/LICENSE-2.0.txt Any republication or derived - * work distributed in source code form must include this copyright and license - * notice. +/* Copyright (c) 2011 Peter Troshin + * + * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 + * + * This library is free software; you can redistribute it and/or modify it under the terms of the + * Apache License version 2 as published by the Apache Software Foundation + * + * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without + * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache + * License for more details. + * + * A copy of the license is in apache_license.txt. It is also available here: + * @see: http://www.apache.org/licenses/LICENSE-2.0.txt + * + * Any republication or derived work distributed in source code form + * must include this copyright and license notice. */ package compbio.data.sequence; -- 1.7.10.2