included instructions to use ps2pdf to reduce the size of file generated by pdflatex...

[jalview-manual.git] / TheJalviewTutorial.tex

diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex
index db1e65f..1bcef5a 100644 (file)
--- a/TheJalviewTutorial.tex
+++ b/TheJalviewTutorial.tex
@@ -3,7 +3,8 @@
 \usepackage[format=hang,margin=10pt]{caption}
 \usepackage{footnote}
 \usepackage{graphicx}
 \usepackage[format=hang,margin=10pt]{caption}
 \usepackage{footnote}
 \usepackage{graphicx}

-\usepackage{amssymb}
+\usepackage{fouriernc}
+%\usepackage{amssymb}

 \usepackage{epstopdf}
 \usepackage{hyperref}
 \usepackage{subfigure}
 \usepackage{epstopdf}
 \usepackage{hyperref}
 \usepackage{subfigure}

@@ -149,8 +150,8 @@ colouring.} and includes a javascript API to allow customisable display of align
 
 
 Jalview 2.8 was released in November 2012. The Jalview Desktop in this version
 
 
 Jalview 2.8 was released in November 2012. The Jalview Desktop in this version

-provides access to protein and nucleic acid sequence, alignment and structure databases, and
-includes the Jmol\footnote{ Provided under the LGPL licence at
+provides access to protein and nucleic acid sequence, alignment and structure
+databases, and includes the Jmol\footnote{ Provided under the LGPL licence at

 \url{http://www.jmol.org}} viewer for molecular structures, and the VARNA\footnote{Provided under GPL licence at \url{http://varna.lri.fr}} program for the visualization of RNA secondary structure. A
 Distributed Annotation System (DAS) client\footnote{jDAS - released under Apache license (v2.0) at \url{http://code.google.com/p/jdas}} which facilitates the retrieval and display of third party sequence
 annotation in association with sequences and any associated structure. It also
 \url{http://www.jmol.org}} viewer for molecular structures, and the VARNA\footnote{Provided under GPL licence at \url{http://varna.lri.fr}} program for the visualization of RNA secondary structure. A
 Distributed Annotation System (DAS) client\footnote{jDAS - released under Apache license (v2.0) at \url{http://code.google.com/p/jdas}} which facilitates the retrieval and display of third party sequence
 annotation in association with sequences and any associated structure. It also