X-Git-Url: http://source.jalview.org/gitweb/?p=jalview-manual.git;a=blobdiff_plain;f=TheJalviewTutorial.tex;h=1bcef5a1dfd1afcbbfc90f1832ef6636c69798b1;hp=db1e65f00c8dd35bf177a4e7fefe04542c303306;hb=1c06198831f0f3a7dcd18d7c3bc1c9d1110a8c0c;hpb=f9c6d2c5e7deed78becd5509f3ecfeeb2306227b diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex index db1e65f..1bcef5a 100644 --- a/TheJalviewTutorial.tex +++ b/TheJalviewTutorial.tex @@ -3,7 +3,8 @@ \usepackage[format=hang,margin=10pt]{caption} \usepackage{footnote} \usepackage{graphicx} -\usepackage{amssymb} +\usepackage{fouriernc} +%\usepackage{amssymb} \usepackage{epstopdf} \usepackage{hyperref} \usepackage{subfigure} @@ -149,8 +150,8 @@ colouring.} and includes a javascript API to allow customisable display of align Jalview 2.8 was released in November 2012. The Jalview Desktop in this version -provides access to protein and nucleic acid sequence, alignment and structure databases, and -includes the Jmol\footnote{ Provided under the LGPL licence at +provides access to protein and nucleic acid sequence, alignment and structure +databases, and includes the Jmol\footnote{ Provided under the LGPL licence at \url{http://www.jmol.org}} viewer for molecular structures, and the VARNA\footnote{Provided under GPL licence at \url{http://varna.lri.fr}} program for the visualization of RNA secondary structure. A Distributed Annotation System (DAS) client\footnote{jDAS - released under Apache license (v2.0) at \url{http://code.google.com/p/jdas}} which facilitates the retrieval and display of third party sequence annotation in association with sequences and any associated structure. It also