minor rewording/style fixing

diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex
index bdc77e7..685fd1e 100644 (file)
--- a/TheJalviewTutorial.tex
+++ b/TheJalviewTutorial.tex
@@ -1368,7 +1368,7 @@ appears to happen, it may be that you have sequence feature annotation
 displayed, and you may have to disable it using the {\sl View $\Rightarrow$
 Show Sequence Features} option before you can see your colourscheme.
 
 displayed, and you may have to disable it using the {\sl View $\Rightarrow$
 Show Sequence Features} option before you can see your colourscheme.
 

-There are two main types of colouring styles: {\bf simple static residue}
+There are two main types of colouring styles: simple {\bf static residue}

 colourschemes and {\bf dynamic schemes} which use conservation and consensus
 analysis to control colouring. {\bf Hybrid colouring} is also possible, where
 static residue schemes are modified using a dynamic scheme. The individual schemes are described in Section \ref{colscheme}.
 colourschemes and {\bf dynamic schemes} which use conservation and consensus
 analysis to control colouring. {\bf Hybrid colouring} is also possible, where
 static residue schemes are modified using a dynamic scheme. The individual schemes are described in Section \ref{colscheme}.

@@ -1589,7 +1589,7 @@ assigned colours (left). The profile is saved (center) and can then be accessed
 \exercise{Colouring Alignments}{
 \label{color}
 Note: Ensure that the {\sl Apply Colour
 \exercise{Colouring Alignments}{
 \label{color}
 Note: Ensure that the {\sl Apply Colour

-To All Groups} flag is not selected (ie unticked) in {\sl Colour} menu in the alignment window.
+To All Groups} flag is not selected (i.e. not ticked) in {\sl Colour} menu in the alignment window.

 % patch needed for 2.10 This must be turned {\sl off} specifically as it is on
 % by default.
 
 % patch needed for 2.10 This must be turned {\sl off} specifically as it is on
 % by default.
 

@@ -1598,7 +1598,7 @@ seed database. Select the alignment menu option {\sl Colour $\Rightarrow$
 Clustalx} and note the colour change. Now try all the other colour schemes in the {\sl Colour} menu. 
 Note that some colour schemes do not colour all residues.}
 \exstep{Colour the alignment using {\sl Colour  $\Rightarrow$ Blosum62 score}. Select a group
 Clustalx} and note the colour change. Now try all the other colour schemes in the {\sl Colour} menu. 
 Note that some colour schemes do not colour all residues.}
 \exstep{Colour the alignment using {\sl Colour  $\Rightarrow$ Blosum62 score}. Select a group

-of around 4 similar sequences. Use the context menu (right click on the residues in the group)
+of around 4 similar sequences. Use the context menu (opened by right clicking on the residues in the group)

 option {\sl Selection $\Rightarrow$ Edit New Group $\Rightarrow$ Group Colour
 $\Rightarrow$ Blosum62 score} to colour the selection. Notice how some residues which
 were not coloured are now coloured. The calculations performed for dynamic
 option {\sl Selection $\Rightarrow$ Edit New Group $\Rightarrow$ Group Colour
 $\Rightarrow$ Blosum62 score} to colour the selection. Notice how some residues which
 were not coloured are now coloured. The calculations performed for dynamic