From c808392c66bd71045577125a4632b2f81cfe6912 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Fri, 2 Oct 2020 17:15:14 +0100 Subject: [PATCH 1/1] explaining in more detail about disabling feature colours if they are shown in the colouring alignments exercise --- TheJalviewTutorial.tex | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex index 685fd1e..4f3cd2d 100644 --- a/TheJalviewTutorial.tex +++ b/TheJalviewTutorial.tex @@ -1610,8 +1610,12 @@ the group using {\sl Colour $\Rightarrow$ Taylor}. Select the menu option {\sl Colour $\Rightarrow$ By Conservation}. Slide the selector in the Conservation Colour Increment dialog box from side to side and observe the changes in the alignment colouring in the selection and in the complete alignment.} -Note: Feature colours overlay residue colouring, and this may mask residue colouring. If this is an issue, he features colours can be -toggled off by going to {\sl View $\Rightarrow$ Show Sequence Features}. + +Note: If you don't see any changes in appearance, it might be because sequence +features are currently displayed (these are introduced later, in Section +\ref{featannot}). To see if features are obscuring your colour scheme settings, look to see if the {\sl View +$\Rightarrow$ Show Sequence Features} option in the alignment window menu is +ticked. If it is, select it to disable feature colouring. {\bf See the video at: \url{http://www.jalview.org/training/Training-Videos}.} } -- 1.7.10.2