JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive display for precalculated alignments, features and annotations files. It lacks some functionality available in the Jalview Desktop, however, such as making images, saving files, and running web service jobs. This is mostly due to security restrictions imposed on applets.
For more information on how to use the applet in your website, see full list of
applet
Pressing one of the buttons below will load up JalviewLite,
a cut down version parameters.
Ferredoxins, chloroplast precursor related UniRef50 cluster
(15 sequences x 150 residues)
| User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment. | |
| Displays a features file on the alignment | |
| Associates PDB file 1GAQ with sequence FER1_MAIZE | |
| Displays a Multiple Sequence Alignment Based JNet Prediction for a Sequence |
RF00031 RFAM Alignment with per seqeunce secondary structure
| Displays an RFAM RNA fold family with secondary structure annotation |