Welcome to Jalview Version $$Version-Rel$$ !!
Please take a look at the release notes for this build. Read on for the highlights.

Highlights in 2.11.2

New features for working with 3D Structure
Jalview 2.11.2 features a number of new capabilities described below.

View predicted protein structures via 3D-Beacons
Jalview 2.11.2's Structure Chooser includes a client for the 3D-Beacons Network. Launched in 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/) provides a central point for the retrieval of predicted and observed 3D structures for sequences in Uniprot, including homology models from Swiss-model and deep learning based predictions from the EBI's Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).

Support for viewing structures with ChimeraX and Pymol
Jalview's 3D structure viewer system has been re-architected to allow easier integration of external structure viewers, and takes advantage of the strucViz2 Chimera communications library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).

The Structures Preferences tab provides new options allowing ChimeraX and Pymol to be used for visualising external 3D structures. Jalview 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2 (incentive). For ChimeraX, we recommend using v1.3 or later.
Views from all structure viewers are saved in Jalview Projects, allowing them to be shared with others using Jalview 2.11.2 or later, providing they have the same viewer installed and configured to be used with Jalview.

Other highlights include: