Welcome to Jalview Version $$Version-Rel$$ !!
Please take a look at the release notes for this build. Read on for the highlights.

Highlights in 2.11.2

New features for working with 3D Structure
Jalview 2.11.2 features a number of new capabilities:

• Linked viewing with ChimeraX and PyMol
  Simply configure your prefered viewer for 3D molecular data in Jalview's structure preferences, make sure that Jalview can locate the viewer's installation, and open a new view via the 3D Structure Chooser!
• View predicted protein structures via 3D-Beacons
  Jalview 2.11.2's Structure Chooser includes a client for the 3D-Beacons Network, a new service that allows predicted and observed 3D models for proteins in Uniprot from a range of resources, including AlphaFold DB, SWISS-MODEL and a growing number of other resources.
• Easier configuration of Jalview's memory allocation

  Retrieval of 3D models via 3D-Beacons
  The 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/) provides a central point for the retrieval of predicted and observed 3D structures for sequences in Uniprot, including homology models from Swiss-model and deep learning based predictions from the EBI's Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).
  See the Structure Chooser's documentation.

  Support for viewing structures with ChimeraX and Pymol
  Jalview's 3D structure viewer system has been re-architected to allow easier integration of external structure viewers, and takes advantage of the strucViz2 Chimera communications library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329). The Structures Preferences tab provides new options allowing ChimeraX and Pymol to be used for visualising external 3D structures. Jalview 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2 (incentive). For ChimeraX, we recommend using v1.3 or later.

  For the full release notes, see the Jalview 2.11.2.0 release notes.

  Known Issues