/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package MCview; import java.util.*; public class Residue { Vector atoms = new Vector(); int number; int count; int seqnumber; public Residue(Vector atoms, int number, int count) { this.atoms = atoms; this.number = number; this.count = count; } public Atom findAtom(String name) { for (int i = 0; i < atoms.size(); i++) { if (((Atom) atoms.elementAt(i)).name.equals(name)) { return (Atom) atoms.elementAt(i); } } return null; } }