/* * Jalview - A Sequence Alignment Editor and Viewer * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.appletgui; import java.awt.*; import java.awt.event.*; import jalview.datamodel.*; public class AnnotationLabels extends Panel implements ActionListener { boolean active = false; AlignmentPanel ap; AlignViewport av; boolean resizing = false; int oldY, mouseX; static String ADDNEW = "Add new row"; static String HIDE = "Hide this row"; static String DELETE = "Delete this row"; static String SHOWALL = "Show all hidden rows"; static String OUTPUT_TEXT = "Show Values In Textbox"; int selectedRow = 0; int scrollOffset = 0; public AnnotationLabels(AlignmentPanel ap) { this.ap = ap; this.av = ap.av; setLayout(null); addMouseListener(new MouseAdapter() { public void mousePressed(MouseEvent evt) { doMousePressed(evt); } }); } public AnnotationLabels(AlignViewport av) { this.av = av; } public void setScrollOffset(int y) { scrollOffset = y; repaint(); } public void actionPerformed(ActionEvent evt) { AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation(); if (evt.getActionCommand().equals(HIDE)) { aa[selectedRow].visible = false; } else if (evt.getActionCommand().equals(SHOWALL)) { for (int i = 0; i < aa.length; i++) { aa[i].visible = true; } } else if (evt.getActionCommand().equals(OUTPUT_TEXT)) { CutAndPasteTransfer cap = new CutAndPasteTransfer(false, ap.alignFrame); Frame frame = new Frame(); frame.add(cap); jalview.bin.JalviewLite.addFrame(frame, ap.alignFrame.getTitle() + " - " + aa[selectedRow].label, 500, 100); cap.setText(aa[selectedRow].toString()); } ap.annotationPanel.adjustPanelHeight(); setSize(getSize().width, ap.annotationPanel.getSize().height); ap.validate(); ap.repaint(); } public void doMousePressed(MouseEvent evt) { int y = evt.getY() - scrollOffset; AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation(); int height = 0; for (int i = 0; i < aa.length; i++) { if (!aa[i].visible) { continue; } height += aa[i].height; if (y < height) { selectedRow = i; break; } } PopupMenu pop = new PopupMenu("Annotations"); MenuItem item = new MenuItem(HIDE); item.addActionListener(this); pop.add(item); item = new MenuItem(SHOWALL); item.addActionListener(this); pop.add(item); this.add(pop); item = new MenuItem(OUTPUT_TEXT); item.addActionListener(this); pop.add(item); if (aa[selectedRow].label.equals("Consensus")) { pop.addSeparator(); final CheckboxMenuItem cbmi = new CheckboxMenuItem( "Ignore Gaps In Consensus", ap.av.getIgnoreGapsConsensus()); cbmi.addItemListener(new ItemListener() { public void itemStateChanged(ItemEvent e) { ap.av.setIgnoreGapsConsensus(cbmi.getState()); ap.repaint(); } }); pop.add(cbmi); } pop.show(this, evt.getX(), evt.getY()); } public void paint(Graphics g) { drawComponent(g, getSize().width); } public void drawComponent(Graphics g, int width) { g.setFont(av.getFont()); FontMetrics fm = g.getFontMetrics(av.getFont()); g.setColor(Color.white); g.fillRect(0, 0, getSize().width, getSize().height); g.translate(0, scrollOffset); g.setColor(Color.black); AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation(); int y = g.getFont().getSize(); int x = 0; if (aa != null) { for (int i = 0; i < aa.length; i++) { if (!aa[i].visible) { continue; } x = width - fm.stringWidth(aa[i].label) - 3; if (aa[i].graph>0) { y += (aa[i].height / 3); } g.drawString(aa[i].label, x, y); if (aa[i].graph>0) { y += (2 * aa[i].height / 3); } else { y += aa[i].height; } } } } }