/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package jalview.appletgui; import java.util.*; import java.awt.*; import java.awt.event.*; import jalview.datamodel.*; import jalview.schemes.*; public class SliderPanel extends Panel implements ActionListener, AdjustmentListener, MouseListener { AlignmentPanel ap; boolean forConservation = true; ColourSchemeI cs; static Frame conservationSlider; static Frame PIDSlider; public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source) { SliderPanel sp = null; if (conservationSlider == null) { sp = new SliderPanel(ap, cs.getConservationInc(), true, cs); conservationSlider = new Frame(); conservationSlider.add(sp); } else { sp = (SliderPanel) conservationSlider.getComponent(0); sp.cs = cs; } conservationSlider.setTitle("Conservation Colour Increment (" + source + ")"); if (ap.av.alignment.getGroups() != null) { sp.setAllGroupsCheckEnabled(true); } else { sp.setAllGroupsCheckEnabled(false); } return sp.getValue(); } public static void showConservationSlider() { try { PIDSlider.setVisible(false); PIDSlider = null; } catch (Exception ex) { } if (!conservationSlider.isVisible()) { jalview.bin.JalviewLite.addFrame(conservationSlider, conservationSlider.getTitle(), 420, 100); conservationSlider.addWindowListener(new WindowAdapter() { public void windowClosing(WindowEvent e) { conservationSlider = null; } }); } } public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source) { SliderPanel pid = null; if (PIDSlider == null) { pid = new SliderPanel(ap, 50, false, cs); PIDSlider = new Frame(); PIDSlider.add(pid); } else { pid = (SliderPanel) PIDSlider.getComponent(0); pid.cs = cs; } PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")"); if (ap.av.alignment.getGroups() != null) { pid.setAllGroupsCheckEnabled(true); } else { pid.setAllGroupsCheckEnabled(false); } return pid.getValue(); } public static void showPIDSlider() { try { conservationSlider.setVisible(false); conservationSlider = null; } catch (Exception ex) { } if (!PIDSlider.isVisible()) { jalview.bin.JalviewLite.addFrame(PIDSlider, PIDSlider.getTitle(), 420, 100); PIDSlider.addWindowListener(new WindowAdapter() { public void windowClosing(WindowEvent e) { PIDSlider = null; } }); } } public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs) { try { jbInit(); } catch (Exception e) { e.printStackTrace(); } this.ap = ap; this.cs = cs; forConservation = forConserve; undoButton.setVisible(false); applyButton.setVisible(false); if (forConservation) { label.setText("Modify conservation visibility"); slider.setMinimum(0); slider.setMaximum(50 + slider.getVisibleAmount()); slider.setUnitIncrement(1); } else { label.setText("Colour residues above % occurence"); slider.setMinimum(0); slider.setMaximum(100 + slider.getVisibleAmount()); slider.setBlockIncrement(1); } slider.addAdjustmentListener(this); slider.addMouseListener(this); slider.setValue(value); valueField.setText(value + ""); } public void valueChanged(int i) { if (cs == null) { return; } ColourSchemeI toChange = null; Vector allGroups = null; int groupIndex = 0; if (allGroupsCheck.getState()) { allGroups = ap.av.alignment.getGroups(); groupIndex = allGroups.size() - 1; } else { toChange = cs; } while (groupIndex > -1) { if (allGroups != null) { toChange = ((SequenceGroup) allGroups.elementAt(groupIndex)).cs; } if (forConservation) { toChange.setConservationInc(i); } else { toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus()); } groupIndex--; } ap.seqPanel.seqCanvas.repaint(); } public void setAllGroupsCheckEnabled(boolean b) { allGroupsCheck.setEnabled(b); } public void actionPerformed(ActionEvent evt) { if (evt.getSource() == applyButton) { applyButton_actionPerformed(); } else if (evt.getSource() == undoButton) { undoButton_actionPerformed(); } else if (evt.getSource() == valueField) { valueField_actionPerformed(); } } public void adjustmentValueChanged(AdjustmentEvent evt) { valueField.setText(slider.getValue() + ""); valueChanged(slider.getValue()); } public void valueField_actionPerformed() { try { int i = Integer.parseInt(valueField.getText()); slider.setValue(i); } catch (Exception ex) { valueField.setText(slider.getValue() + ""); } } public void setValue(int value) { slider.setValue(value); } public int getValue() { return Integer.parseInt(valueField.getText()); } // this is used for conservation colours, PID colours and redundancy threshold protected Scrollbar slider = new Scrollbar(); protected TextField valueField = new TextField(); protected Label label = new Label(); Panel jPanel1 = new Panel(); Panel jPanel2 = new Panel(); protected Button applyButton = new Button(); protected Button undoButton = new Button(); FlowLayout flowLayout1 = new FlowLayout(); protected Checkbox allGroupsCheck = new Checkbox(); BorderLayout borderLayout1 = new BorderLayout(); BorderLayout borderLayout2 = new BorderLayout(); FlowLayout flowLayout2 = new FlowLayout(); private void jbInit() throws Exception { this.setLayout(borderLayout2); // slider.setMajorTickSpacing(10); // slider.setMinorTickSpacing(1); // slider.setPaintTicks(true); slider.setBackground(Color.white); slider.setFont(new java.awt.Font("Verdana", 0, 11)); slider.setOrientation(0); valueField.setFont(new java.awt.Font("Verdana", 0, 11)); valueField.setText(" "); valueField.addActionListener(this); label.setFont(new java.awt.Font("Verdana", 0, 11)); label.setText("set this label text"); jPanel1.setLayout(borderLayout1); jPanel2.setLayout(flowLayout1); applyButton.setFont(new java.awt.Font("Verdana", 0, 11)); applyButton.setLabel("Apply"); applyButton.addActionListener(this); undoButton.setEnabled(false); undoButton.setFont(new java.awt.Font("Verdana", 0, 11)); undoButton.setLabel("Undo"); undoButton.addActionListener(this); allGroupsCheck.setEnabled(false); allGroupsCheck.setFont(new java.awt.Font("Verdana", 0, 11)); allGroupsCheck.setLabel("Apply threshold to all groups"); allGroupsCheck.setName("Apply to all Groups"); this.setBackground(Color.white); this.setForeground(Color.black); jPanel2.add(label, null); jPanel2.add(applyButton, null); jPanel2.add(undoButton, null); jPanel2.add(allGroupsCheck); jPanel1.add(valueField, java.awt.BorderLayout.EAST); jPanel1.add(slider, java.awt.BorderLayout.CENTER); this.add(jPanel1, java.awt.BorderLayout.SOUTH); this.add(jPanel2, java.awt.BorderLayout.CENTER); } protected void applyButton_actionPerformed() { } protected void undoButton_actionPerformed() { } public void mousePressed(MouseEvent evt) { } public void mouseReleased(MouseEvent evt) { ap.paintAlignment(true); } public void mouseClicked(MouseEvent evt) { } public void mouseEntered(MouseEvent evt) { } public void mouseExited(MouseEvent evt) { } }