/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.bin; import java.io.File; import java.io.IOException; import java.lang.management.ManagementFactory; import java.util.ArrayList; import java.util.List; import java.util.Locale; import jalview.util.ChannelProperties; import jalview.util.LaunchUtils; /** * A Launcher class for Jalview. This class is used to launch Jalview from the * shadowJar when Getdown is not used or available. It attempts to take all the * command line arguments to pass on to the jalview.bin.Jalview class, but to * insert a -Xmx memory setting to a sensible default, using the -jvmmempc and * -jvmmemmax application arguments if specified. If not specified then system * properties will be looked for by jalview.bin.MemorySetting. If the user has * provided the JVM with a -Xmx setting directly and not set -jvmmempc or * -jvmmemmax then this setting will be used and system properties ignored. If * -Xmx is set as well as -jvmmempc or -jvmmemmax as argument(s) then the -Xmx * argument will NOT be passed on to the main application launch. * * @author bsoares * */ public class Launcher { private final static String startClass = "jalview.bin.Jalview"; private final static String dockIconPath = ChannelProperties .getProperty("logo.512"); /** * main method for jalview.bin.Launcher. This restarts the same JRE's JVM with * the same arguments but with memory adjusted based on extracted -jvmmempc * and -jvmmemmax application arguments. If on a Mac then extra dock:icon and * dock:name arguments are also set. * * @param args */ public static void main(String[] args) { if (!LaunchUtils.checkJavaVersion()) { System.err.println("WARNING - The Java version being used (Java " + LaunchUtils.getJavaVersion() + ") may lead to problems. This installation of Jalview should be used with Java " + LaunchUtils.getJavaCompileVersion() + "."); } final String javaBin = System.getProperty("java.home") + File.separator + "bin" + File.separator + "java"; List command = new ArrayList<>(); command.add(javaBin); String memSetting = null; boolean isAMac = System.getProperty("os.name").indexOf("Mac") > -1; for (String jvmArg : ManagementFactory.getRuntimeMXBean() .getInputArguments()) { command.add(jvmArg); } command.add("-cp"); command.add(ManagementFactory.getRuntimeMXBean().getClassPath()); String jvmmempc = null; String jvmmemmax = null; ArrayList arguments = new ArrayList<>(); for (String arg : args) { // jvmmempc and jvmmemmax args used to set memory and are not passed on to // startClass if (arg.startsWith( "-" + MemorySetting.MAX_HEAPSIZE_PERCENT_PROPERTY_NAME + "=")) { jvmmempc = arg.substring( MemorySetting.MAX_HEAPSIZE_PERCENT_PROPERTY_NAME.length() + 2); } else if (arg.startsWith( "-" + MemorySetting.MAX_HEAPSIZE_PROPERTY_NAME + "=")) { jvmmemmax = arg.substring( MemorySetting.MAX_HEAPSIZE_PROPERTY_NAME.length() + 2); } else { arguments.add(arg); } } // use saved preferences if no cmdline args boolean useCustomisedSettings = LaunchUtils .getBooleanUserPreference(MemorySetting.CUSTOMISED_SETTINGS); if (useCustomisedSettings) { if (jvmmempc == null) { jvmmempc = LaunchUtils .getUserPreference(MemorySetting.MEMORY_JVMMEMPC); } if (jvmmemmax == null) { jvmmemmax = LaunchUtils .getUserPreference(MemorySetting.MEMORY_JVMMEMMAX); } } // add memory setting if not specified boolean memSet = false; boolean dockIcon = false; boolean dockName = false; for (int i = 0; i < command.size(); i++) { String arg = command.get(i); if (arg.startsWith("-Xmx")) { // only use -Xmx if jvmmemmax and jvmmempc have not been set if (jvmmempc == null && jvmmemmax == null) { memSetting = arg; memSet = true; } } else if (arg.startsWith("-Xdock:icon")) { dockIcon = true; } else if (arg.startsWith("-Xdock:name")) { dockName = true; } } if (!memSet) { long maxMemLong = MemorySetting.getMemorySetting(jvmmemmax, jvmmempc); if (maxMemLong > 0) { memSetting = "-Xmx" + Long.toString(maxMemLong); memSet = true; command.add(memSetting); } } if (isAMac) { if (!dockIcon) { command.add("-Xdock:icon=" + dockIconPath); } if (!dockName) { // -Xdock:name=... doesn't actually work :( // Leaving it in in case it gets fixed command.add( "-Xdock:name=" + ChannelProperties.getProperty("app_name")); } } String scalePropertyArg = HiDPISetting.getScalePropertyArg(); if (scalePropertyArg != null) { System.out.println("Running " + startClass + " with scale setting " + scalePropertyArg); command.add(scalePropertyArg); } command.add(startClass); command.addAll(arguments); final ProcessBuilder builder = new ProcessBuilder(command); if (Boolean.parseBoolean(System.getProperty("launcherprint", "false"))) { System.out.println( "LAUNCHER COMMAND: " + String.join(" ", builder.command())); } System.out.println("Running " + startClass + " with " + (memSetting == null ? "no memory setting" : ("memory setting " + memSetting))); if (Boolean.parseBoolean(System.getProperty("launcherstop", "false"))) { System.exit(0); } try { builder.inheritIO(); Process process = builder.start(); process.waitFor(); } catch (IOException e) { if (e.getMessage().toLowerCase(Locale.ROOT).contains("memory")) { System.out.println("Caught a memory exception: " + e.getMessage()); // Probably the "Cannot allocate memory" error, try without the memory // setting ArrayList commandNoMem = new ArrayList<>(); for (int i = 0; i < command.size(); i++) { if (!command.get(i).startsWith("-Xmx")) { commandNoMem.add(command.get(i)); } } final ProcessBuilder builderNoMem = new ProcessBuilder( commandNoMem); System.out.println("Command without memory setting: " + String.join(" ", builderNoMem.command())); try { builderNoMem.inheritIO(); Process processNoMem = builderNoMem.start(); processNoMem.waitFor(); } catch (Exception ex) { ex.printStackTrace(); } } else { e.printStackTrace(); } } catch (Exception e) { e.printStackTrace(); } // System.exit(0); } }