/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.datamodel; public class SequenceDummy extends Sequence { public SequenceDummy(String sequenceId) { super(sequenceId, "THISAPLACEHOLDER"); } private boolean dummy = true; /** * become a proxy for mseq, merging any existing annotation on this sequence * * @param mseq */ public void become(SequenceI mseq) { initSeqFrom(mseq, null); dummy = false; } /** * Test if the SequenceDummy has been promoted to a real sequence via * SequenceDummy.become * * @return true if this is a placeholder and contains no actual sequence data */ public boolean isDummy() { return dummy; } /** * Always suppress /start-end for display name as we don't know it */ @Override public String getDisplayId(boolean jvsuffix) { // required for correct behaviour of SequenceIdMatcher return super.getDisplayId(false); } }