/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; import jalview.api.FeatureColourI; import jalview.schemes.FeatureColour; import jalview.schemes.FeatureSettingsAdapter; import java.awt.Color; import mc_view.PDBChain; public class PDBFeatureSettings extends FeatureSettingsAdapter { // TODO find one central place to define feature names private static final String FEATURE_INSERTION = "INSERTION"; private static final String FEATURE_RES_NUM = PDBChain.RESNUM_FEATURE; @Override public boolean isFeatureHidden(String type) { return type.equalsIgnoreCase(FEATURE_RES_NUM); } @Override public FeatureColourI getFeatureColour(String type) { if (type.equalsIgnoreCase(FEATURE_INSERTION)) { return new FeatureColour() { @Override public Color getColour() { return Color.RED; } }; } return null; } /** * Order to render insertion after ResNum */ @Override public int compare(String feature1, String feature2) { if (feature1.equalsIgnoreCase(FEATURE_INSERTION)) { return +1; } if (feature2.equalsIgnoreCase(FEATURE_INSERTION)) { return -1; } if (feature1.equalsIgnoreCase(FEATURE_RES_NUM)) { return +1; } if (feature2.equalsIgnoreCase(FEATURE_RES_NUM)) { return -1; } return 0; } }