Java class for commentType complex type. * *
The following schema fragment specifies the expected content contained within this class. * *
* <complexType name="commentType">
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/>
* <choice minOccurs="0">
* <group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/>
* <sequence>
* <element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/>
* </sequence>
* <sequence>
* <element name="subcellularLocation" type="{http://uniprot.org/uniprot}subcellularLocationType" maxOccurs="unbounded"/>
* </sequence>
* <element name="conflict">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="sequence" minOccurs="0">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="resource" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="EMBL-CDS"/>
* <enumeration value="EMBL"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <attribute name="type" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="frameshift"/>
* <enumeration value="erroneous initiation"/>
* <enumeration value="erroneous termination"/>
* <enumeration value="erroneous gene model prediction"/>
* <enumeration value="erroneous translation"/>
* <enumeration value="miscellaneous discrepancy"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* <sequence>
* <element name="link" maxOccurs="unbounded" minOccurs="0">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <sequence>
* <element name="event" type="{http://uniprot.org/uniprot}eventType" maxOccurs="4"/>
* <element name="isoform" type="{http://uniprot.org/uniprot}isoformType" maxOccurs="unbounded" minOccurs="0"/>
* </sequence>
* <sequence>
* <element name="interactant" type="{http://uniprot.org/uniprot}interactantType" maxOccurs="2" minOccurs="2"/>
* <element name="organismsDiffer" type="{http://www.w3.org/2001/XMLSchema}boolean"/>
* <element name="experiments" type="{http://www.w3.org/2001/XMLSchema}int"/>
* </sequence>
* <element name="disease">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
* </sequence>
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </choice>
* <element name="location" type="{http://uniprot.org/uniprot}locationType" maxOccurs="unbounded" minOccurs="0"/>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
* </sequence>
* <attribute name="type" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="allergen"/>
* <enumeration value="alternative products"/>
* <enumeration value="biotechnology"/>
* <enumeration value="biophysicochemical properties"/>
* <enumeration value="catalytic activity"/>
* <enumeration value="caution"/>
* <enumeration value="cofactor"/>
* <enumeration value="developmental stage"/>
* <enumeration value="disease"/>
* <enumeration value="domain"/>
* <enumeration value="disruption phenotype"/>
* <enumeration value="activity regulation"/>
* <enumeration value="function"/>
* <enumeration value="induction"/>
* <enumeration value="miscellaneous"/>
* <enumeration value="pathway"/>
* <enumeration value="pharmaceutical"/>
* <enumeration value="polymorphism"/>
* <enumeration value="PTM"/>
* <enumeration value="RNA editing"/>
* <enumeration value="similarity"/>
* <enumeration value="subcellular location"/>
* <enumeration value="sequence caution"/>
* <enumeration value="subunit"/>
* <enumeration value="tissue specificity"/>
* <enumeration value="toxic dose"/>
* <enumeration value="online information"/>
* <enumeration value="mass spectrometry"/>
* <enumeration value="interaction"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="locationType" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="mass" type="{http://www.w3.org/2001/XMLSchema}float" />
* <attribute name="error" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="method" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "commentType", propOrder = {
"molecule",
"absorption",
"kinetics",
"phDependence",
"redoxPotential",
"temperatureDependence",
"cofactor",
"subcellularLocation",
"conflict",
"link",
"event",
"isoform",
"interactant",
"organismsDiffer",
"experiments",
"disease",
"location",
"text"
})
public class CommentType {
protected MoleculeType molecule;
protected CommentType.Absorption absorption;
protected CommentType.Kinetics kinetics;
protected CommentType.PhDependence phDependence;
protected CommentType.RedoxPotential redoxPotential;
protected CommentType.TemperatureDependence temperatureDependence;
protected List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a set method for the cofactor property.
*
*
* For example, to add a new item, do as follows: *
* getCofactor().add(newItem);
*
*
*
*
* Objects of the following type(s) are allowed in the list
* {@link CofactorType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link SubcellularLocationType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link CommentType.Link }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EventType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link IsoformType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link InteractantType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link LocationType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link Integer }
*
*
*/
public List Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
* Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
* Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
* Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
* Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public List Java class for anonymous complex type.
*
* The following schema fragment specifies the expected content contained within this class.
*
*
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
* This is why there is not a
* For example, to add a new item, do as follows:
*
* Objects of the following type(s) are allowed in the list
* {@link EvidencedStringType }
*
*
*/
public Listset method for the subcellularLocation property.
*
*
* getSubcellularLocation().add(newItem);
*
*
*
* set method for the link property.
*
*
* getLink().add(newItem);
*
*
*
* set method for the event property.
*
*
* getEvent().add(newItem);
*
*
*
* set method for the isoform property.
*
*
* getIsoform().add(newItem);
*
*
*
* set method for the interactant property.
*
*
* getInteractant().add(newItem);
*
*
*
* set method for the location property.
*
*
* getLocation().add(newItem);
*
*
*
* set method for the text property.
*
*
* getText().add(newItem);
*
*
*
* set method for the evidence property.
*
*
* getEvidence().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="max" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"max",
"text"
})
public static class Absorption {
protected EvidencedStringType max;
protected Listset method for the text property.
*
*
* getText().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="sequence" minOccurs="0">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="resource" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="EMBL-CDS"/>
* <enumeration value="EMBL"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <attribute name="type" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="frameshift"/>
* <enumeration value="erroneous initiation"/>
* <enumeration value="erroneous termination"/>
* <enumeration value="erroneous gene model prediction"/>
* <enumeration value="erroneous translation"/>
* <enumeration value="miscellaneous discrepancy"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"sequence"
})
public static class Conflict {
protected CommentType.Conflict.Sequence sequence;
@XmlAttribute(name = "type", required = true)
protected String type;
@XmlAttribute(name = "ref")
protected String ref;
/**
* Gets the value of the sequence property.
*
* @return
* possible object is
* {@link CommentType.Conflict.Sequence }
*
*/
public CommentType.Conflict.Sequence getSequence() {
return sequence;
}
/**
* Sets the value of the sequence property.
*
* @param value
* allowed object is
* {@link CommentType.Conflict.Sequence }
*
*/
public void setSequence(CommentType.Conflict.Sequence value) {
this.sequence = value;
}
/**
* Gets the value of the type property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getType() {
return type;
}
/**
* Sets the value of the type property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setType(String value) {
this.type = value;
}
/**
* Gets the value of the ref property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getRef() {
return ref;
}
/**
* Sets the value of the ref property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setRef(String value) {
this.ref = value;
}
/**
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="resource" use="required">
* <simpleType>
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="EMBL-CDS"/>
* <enumeration value="EMBL"/>
* </restriction>
* </simpleType>
* </attribute>
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "")
public static class Sequence {
@XmlAttribute(name = "resource", required = true)
protected String resource;
@XmlAttribute(name = "id", required = true)
protected String id;
@XmlAttribute(name = "version")
protected Integer version;
/**
* Gets the value of the resource property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getResource() {
return resource;
}
/**
* Sets the value of the resource property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setResource(String value) {
this.resource = value;
}
/**
* Gets the value of the id property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getId() {
return id;
}
/**
* Sets the value of the id property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setId(String value) {
this.id = value;
}
/**
* Gets the value of the version property.
*
* @return
* possible object is
* {@link Integer }
*
*/
public Integer getVersion() {
return version;
}
/**
* Sets the value of the version property.
*
* @param value
* allowed object is
* {@link Integer }
*
*/
public void setVersion(Integer value) {
this.version = value;
}
}
}
/**
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
* <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
* </sequence>
* <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"name",
"acronym",
"description",
"dbReference"
})
public static class Disease {
@XmlElement(required = true)
protected String name;
@XmlElement(required = true)
protected String acronym;
@XmlElement(required = true)
protected String description;
@XmlElement(required = true)
protected DbReferenceType dbReference;
@XmlAttribute(name = "id", required = true)
protected String id;
/**
* Gets the value of the name property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getName() {
return name;
}
/**
* Sets the value of the name property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setName(String value) {
this.name = value;
}
/**
* Gets the value of the acronym property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getAcronym() {
return acronym;
}
/**
* Sets the value of the acronym property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setAcronym(String value) {
this.acronym = value;
}
/**
* Gets the value of the description property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getDescription() {
return description;
}
/**
* Sets the value of the description property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setDescription(String value) {
this.description = value;
}
/**
* Gets the value of the dbReference property.
*
* @return
* possible object is
* {@link DbReferenceType }
*
*/
public DbReferenceType getDbReference() {
return dbReference;
}
/**
* Sets the value of the dbReference property.
*
* @param value
* allowed object is
* {@link DbReferenceType }
*
*/
public void setDbReference(DbReferenceType value) {
this.dbReference = value;
}
/**
* Gets the value of the id property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getId() {
return id;
}
/**
* Sets the value of the id property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setId(String value) {
this.id = value;
}
}
/**
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="KM" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
* <element name="Vmax" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"km",
"vmax",
"text"
})
public static class Kinetics {
@XmlElement(name = "KM")
protected Listset method for the km property.
*
*
* getKM().add(newItem);
*
*
*
* set method for the vmax property.
*
*
* getVmax().add(newItem);
*
*
*
* set method for the text property.
*
*
* getText().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "")
public static class Link {
@XmlAttribute(name = "uri", required = true)
@XmlSchemaType(name = "anyURI")
protected String uri;
/**
* Gets the value of the uri property.
*
* @return
* possible object is
* {@link String }
*
*/
public String getUri() {
return uri;
}
/**
* Sets the value of the uri property.
*
* @param value
* allowed object is
* {@link String }
*
*/
public void setUri(String value) {
this.uri = value;
}
}
/**
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"text"
})
public static class PhDependence {
@XmlElement(required = true)
protected Listset method for the text property.
*
*
* getText().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"text"
})
public static class RedoxPotential {
@XmlElement(required = true)
protected Listset method for the text property.
*
*
* getText().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
* </sequence>
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
"text"
})
public static class TemperatureDependence {
@XmlElement(required = true)
protected Listset method for the text property.
*
*
* getText().add(newItem);
*
*
*
*