#---JalviewX Properties File---
#Fri Apr 25 09:54:25 BST 2014
SCREEN_Y=768
SCREEN_X=936
SHOW_WSDISCOVERY_ERRORS=true
LATEST_VERSION=2.8.0b1
SHOW_CONSERVATION=true
JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
JAVA_CONSOLE_SCREEN_WIDTH=450
LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
ID_ITALICS=true
SORT_ALIGNMENT=No sort
SHOW_IDENTITY=true
WSMENU_BYHOST=false
SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
SHOW_FULLSCREEN=false
RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
FONT_NAME=SansSerif
BLC_JVSUFFIX=true
VERSION_CHECK=false
YEAR=2011
SHOW_DBREFS_TOOLTIP=true
MSF_JVSUFFIX=true
SCREENGEOMETRY_HEIGHT=1600
JAVA_CONSOLE_SCREEN_Y=475
JAVA_CONSOLE_SCREEN_X=830
PFAM_JVSUFFIX=true
PIR_JVSUFFIX=true
STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
JAVA_CONSOLE_SCREEN_HEIGHT=162
PIR_MODELLER=false
GAP_SYMBOL=-
SHOW_QUALITY=true
SHOW_GROUP_CONSERVATION=false
SHOW_JWS2_SERVICES=true
SHOW_NPFEATS_TOOLTIP=true
FONT_STYLE=plain
ANTI_ALIAS=false
SORT_BY_TREE=false
RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
SHOW_GROUP_CONSENSUS=false
SHOW_CONSENSUS_HISTOGRAM=true
SHOW_OVERVIEW=false
AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
FIGURE_AUTOIDWIDTH=false
SCREEN_WIDTH=900
ANNOTATIONCOLOUR_MIN=ffc800
SHOW_STARTUP_FILE=false
RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
DEFAULT_FILE_FORMAT=FASTA
SHOW_JAVA_CONSOLE=false
VERSION=2.8b1
FIGURE_USERIDWIDTH=
WSMENU_BYTYPE=false
DEFAULT_COLOUR=None
NOQUESTIONNAIRES=true
JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
BUILD_DATE=01 November 2013
PILEUP_JVSUFFIX=true
SHOW_CONSENSUS_LOGO=false
SCREENGEOMETRY_WIDTH=2560
SHOW_ANNOTATIONS=true
JALVIEW_RSS_WINDOW_SCREEN_Y=0
USAGESTATS=false
JALVIEW_RSS_WINDOW_SCREEN_X=0
SHOW_UNCONSERVED=false
SHOW_JVSUFFIX=true
DAS_LOCAL_SOURCE=
SCREEN_HEIGHT=650
ANNOTATIONCOLOUR_MAX=ff0000
AUTO_CALC_CONSENSUS=true
FASTA_JVSUFFIX=true
DAS_ACTIVE_SOURCE=uniprot\t
JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
PAD_GAPS=false
CLUSTAL_JVSUFFIX=true
SHOW_ENFIN_SERVICES=true
FONT_SIZE=10
RIGHT_ALIGN_IDS=false
USE_PROXY=false
WRAP_ALIGNMENT=false
#DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
BOOTSTRAP_TEST=true
NOTBOOTSTRAP_TEST=true